FMO08888.5prime Sequence
1047 bp (1009 high quality bases) assembled on 2010-08-03
> FMO08888.5prime
CAGTCGACATGCACGAACTCATTGGCAAATACAGCCATTCGGACATGGAC
ATGCTGAAGGATCAGCTGAAGCGTGGGGGCTACATGGGCGCCCTTGGTCC
GCCCACGCCCGGCACATCCGCCCCCTCGCCCTTCCTGATGCCCGCCGAAT
TCTACAAAAGCCTGCTCGCCAGCGCCGTTCTGCAACAGCAACAGCAGCAC
AAGTTCTACGCCGGCACGCCCTCACCCAGTCCCGCCCCCAGTTTGTCACC
CACCTCAGGTCGCCACTTGCTGTTTTCCACGGCAGCTGCGGCAACCGCTT
GTGCTCCGGAGAATGGTCACGTGAAGACGGAGCTCGAAGAGCAGGACCAG
CAGAACGGGATGCCGGAAACCGTCGGACATGAGGAGCAGAAACCCATCAT
CGAAGAGAACCCAACGCCGAATAAGCCGCACAACAACAACGGTTACTCGT
GGTCCACCGGCAACAACAACGAGGTTGTCAGTCATAGCAGCAACGGCCAC
ACCAACAACCACCCAACAACACCACCCACTCCGCCCAACGAGGCCAGCGC
CACCCAAGCGACTTCAGTGTCCGCAATTAATTTGAATCAAGCCCAACCCG
CATCACAGACGCGTTCTAACTTTGGCAGCTCCATAAAGTCACCACCATCA
GAACCGGACGCGGTCACTGCTGCCACGTGCAAAAGTCAGGAGAATAACTC
CGGCCAGAACCCCACCCCCAACTCCCTCTCCGATCACAACCCGGCTCACA
ACCTTAACTCGAATTCAACGGCCGCTGCCGTGGCCGCCGCTGCCGCCGCC
GCCGCCGCTGCCAACATGCTCGATCGGCGGCGTCCAGGGTCAGAATCCCA
CCCAGGGCCTGGTCCACTGGGATGAGTGCCGTGATGTGCTGAGCACATGA
CCGGCCAGACGCACCACGATCCTGGCGCCGTAGGCATGCACTACATGTGG
GACGGGAACGTTGACGTGAGTATCCACTGGTATTACTTGGGATTCACGGG
GGGCTGGCAAATTTCGTGTGGGCTTGTGCAAGCTTTTCTAGACCATT
FMO08888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rn-RF | 4270 | CG42277-RF | 61..1015 | 8..965 | 4670 | 99.4 | Plus |
| rn-RG | 5014 | CG42277-RG | 1220..1759 | 423..965 | 2595 | 98.9 | Plus |
| rn-RE | 5014 | CG42277-RE | 1220..1759 | 423..965 | 2595 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7300622..7301176 | 980..423 | 2580 | 98.7 | Minus |
| 3R | 32079331 | 3R | 7301759..7302173 | 422..8 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:34 has no hits.
FMO08888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:12 Download gff for
FMO08888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RD | 54..1075 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:13 Download gff for
FMO08888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RF | 54..1015 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:31 Download gff for
FMO08888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rn-RF | 54..1015 | 1..965 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:31 Download gff for
FMO08888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7300577..7301176 | 423..1031 | 97 | <- | Minus |
| 3R | 7301759..7302178 | 1..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:13 Download gff for
FMO08888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3126299..3126898 | 423..1031 | 97 | <- | Minus |
| arm_3R | 3127481..3127900 | 1..422 | 99 | | Minus |
