Clone FMO08894 Report

Search the DGRC for FMO08894

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:88
Well:94
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15023-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08894.5prime Sequence

533 bp (533 high quality bases) assembled on 2010-08-03

> FMO08894.5prime
CAGTCGACATGAAGCTATTCATTTTGGCTACCTGTCTGCTGGCTTTTGCA
GCCGGTGATGTTTCGCATTTGCCGCTGGAACTCCTGGAGGAGCATCATGA
GCATGGCTATGGCTATGACTACCCCAAGCCGGAGATACCATTTGTGATTA
CCTCGACGACGGAGCCACCACCGCCACCACCGACTTATCTGCCACCCAAA
CCAGTACCCACTTACCTACCTCCTCCTCCGCCCACAACCACAACTACCAC
CACAACCACTCCGGCTCCTACTCCCGCTCCTACCTACCTTCCTCCCCCTC
CACCTACTACCACTACCACGACAACCACTCCCGCTCCCACTCCTGCTCCC
ACTTACCTTCCTCCCCCACCTCCACCACCGCGTACCACTACCACCACCAC
CACTACAACCACAACGACACCTGCACCCACGCCAGTGCCCACGTACCTTC
CACCCCCACCACCACAACCGGAACCGGGTTACCACTACGATGTGCCCGCC
CAAGAGTTCACCTTCGCAAGCTTTCTAGACCAT

FMO08894.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG15023-RD 819 CG15023-RD 186..692 9..515 2535 100 Plus
CG15023-RB 686 CG15023-RB 53..559 9..515 2535 100 Plus
CG15023-RC 683 CG15023-RC 55..556 14..515 2510 100 Plus
CG15023-RD 819 CG15023-RD 390..505 281..397 230 81.4 Plus
CG15023-RB 686 CG15023-RB 257..372 281..397 230 81.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4460749..4461253 515..11 2525 100 Minus
3L 28110227 3L 4460966..4461043 367..290 195 83.3 Minus
Blast to na_te.dros performed on 2014-11-28 20:07:26 has no hits.

FMO08894.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:21:14 Download gff for FMO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15023-RB 15..532 1..521 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:08 Download gff for FMO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15023-RB 47..564 1..521 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:01 Download gff for FMO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15023-RB 47..564 1..521 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:01 Download gff for FMO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4460744..4461255 8..521 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:08 Download gff for FMO08894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4460744..4461255 8..521 99   Minus