FMO08906.5prime Sequence
1055 bp (994 high quality bases) assembled on 2010-08-03
> FMO08906.5prime
CAGTCGACATGCTGCTGCCCCCGTACCAAGAAGCCTGCAATCCCGGCTTC
TGTGATTGCCCGTTTCCCAACTCCATTGAGGTTACCAACCACAAGGGCCA
TATACCCGACCTGGTCAGGTGCCAATGCGGCGAGGATGAGTCCGGAAACG
TGAATGCCTGGCGGTGGCACGCCACTGATGAATCGGATGCCGTGGTCACC
GACCGGGACATCATCTTCCATCCCACCTACAGTCAGGGCACGGCGATTGT
GAGAGGGGAACAGGCCCTAAAAACAAACATGGTGCACTTTTGGGAGATGC
GCGTCATCACGACTCTGGCCGGCACGGATGTGATGTTCGGCATCGGCACG
GAAAGCGTTAATCTAGGGCAGTTCAAGTTTCACTTTGTCTCGGCCCTGGG
CACCAATGCCCAGTCCTGGGGCTTTTCGTATTCCGGAAGGATTCAGCACT
GTGGCGAGTTACTGCCCTACGGCCAGAAGTTCTCGCAGGGCTGCTTGATT
GGTGTCTGTTTGGATCGAACGCGTGGGCACTTGGAGTTCTATTTGAACCG
CAGATCGCTGGGAGTGGCCTACACCAATGTCCCGACGGATCCGGATGTCA
AAATATATCCCATGGTCTGCTCCACAGCCGCGAAGTCCGTAATTAGGCTG
ATCAACTGCACTTCGCAACCAGTCACACTGCAGCTGCGATCTTTCCAAGC
ATTGTCCAGGCAGCCGCTCAAATTGGCCGAACTGCGTCAAATGCCGGGTC
TCAAAGGCATCATGTAATCCTACTGGTTCCTGGCACCGCCAATTCGTTAC
TCCCGGAACTCCCGCGAAAACGAATTGGATCTGGGCGACGAAGCAGTGCT
CTCAAGCTCCAAGCAACGGTTGAGCGCAAACAAAAGTACCGAGAACCGAC
GATGCGGCTGTTGATGAGGACGACATGTACGCCAATGCACACAAAATCAC
GTTGCGAAGCAGTGATAAGCTGGCGACGAGGAGCACACCGCTAGTGTCCA
CGAAAAGTTGCGACGAGTACCTTCACTACCTGCTTGCAAGCTTTCTAGAC
CATTC
FMO08906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10516-RA | 1329 | CG10516-RA | 166..1192 | 8..1035 | 4935 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15968998..15969560 | 332..893 | 2750 | 99.6 | Plus |
| 3L | 28110227 | 3L | 15968369..15968693 | 8..332 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 15969627..15969765 | 894..1035 | 490 | 93 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:08 has no hits.
FMO08906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:23:55 Download gff for
FMO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 197..1240 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:00 Download gff for
FMO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 156..1199 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:27 Download gff for
FMO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 156..1199 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:27 Download gff for
FMO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15968359..15968693 | 1..332 | 98 | -> | Plus |
| 3L | 15968999..15969560 | 333..893 | 99 | -> | Plus |
| 3L | 15969626..15969772 | 894..1043 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:00 Download gff for
FMO08906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15961459..15961793 | 1..332 | 98 | -> | Plus |
| arm_3L | 15962099..15962660 | 333..893 | 99 | -> | Plus |
| arm_3L | 15962726..15962872 | 894..1043 | 91 | | Plus |
