FMO08907.5prime Sequence
485 bp (485 high quality bases) assembled on 2010-08-03
> FMO08907.5prime
CAGTCGACATGCTTTTAATAAGGAGTCTAGTAATTGTGTTTTTAGTAGCG
ATAAGCGAGTTCGATCGAAACTTTGCCATAAACCATGACAATGCTGGAAT
AGTTCTAAGGGAAATAAACAAGAGAAGAGATCGCCATGGAGTCCCAAAAT
TGACATTGGACAACGTGCTCAGTAAGGGATGCCAAAGTTATGCTTGGAAA
CTGTCCAAGTCGGCGACTCTTAACTATTCGGACCCCACTAACAAGGATTA
CACAGAAAGCATCTGCAGATTTGAAGTAAAGAGGGGAGCACTGTCGAGAT
GTGTCAAGAACTGGTATAATGGAAGGAAGTTCGATATTTTAGACCCCAAG
GCTAAAGATTTTACTGCCATGATTTGGAGGTCGTCCGTTTCCTTGGGATA
TGGCGACGCTAACATAAATTTTTCTTCGTTGGCACATCGTAGGCACCGAA
CGCTCGGACATGTTCCCGCAAGCTTTCTAGACCAT
FMO08907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31286-RB | 1834 | CG31286-RB | 91..501 | 9..419 | 2055 | 100 | Plus |
| CG31286-RB | 1834 | CG31286-RB | 898..950 | 415..467 | 250 | 98.1 | Plus |
| CG1315-RB | 1456 | CG1315-RB | 1256..1304 | 467..419 | 245 | 100 | Minus |
| CG1315-RA | 1409 | CG1315-RA | 1256..1304 | 467..419 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6641621..6641842 | 197..418 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 6641426..6641565 | 58..197 | 700 | 100 | Plus |
| 3R | 32079331 | 3R | 6641322..6641372 | 9..59 | 255 | 100 | Plus |
| 3R | 32079331 | 3R | 6642414..6642462 | 419..467 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:09 has no hits.
FMO08907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:23:54 Download gff for
FMO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RC | 91..549 | 9..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:21 Download gff for
FMO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..501 | 9..418 | 99 | -> | Plus |
| CG31286-RB | 902..950 | 419..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:13 Download gff for
FMO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..501 | 9..418 | 99 | -> | Plus |
| CG31286-RB | 902..950 | 419..467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:13 Download gff for
FMO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6641322..6641372 | 9..59 | 100 | -> | Plus |
| 3R | 6641428..6641565 | 60..197 | 100 | -> | Plus |
| 3R | 6641622..6641842 | 198..418 | 100 | -> | Plus |
| 3R | 6642414..6642462 | 419..467 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:21 Download gff for
FMO08907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2468136..2468184 | 419..467 | 100 | | Plus |
| arm_3R | 2467150..2467287 | 60..197 | 100 | -> | Plus |
| arm_3R | 2467344..2467564 | 198..418 | 100 | -> | Plus |
| arm_3R | 2467044..2467094 | 9..59 | 100 | -> | Plus |
