FMO08935.5prime Sequence
966 bp (923 high quality bases) assembled on 2010-08-03
> FMO08935.5prime
CAGTCGACATGGCGGACACCAAGGAGACGGTTGTGGAGGGCGTGGAGGCG
TTGACACTAAATGGAAAACCGGACGCAGAACCCGTGGAAACGGGCACGGA
TGCCCAGGCACAGGAGGGAGCCACTGCACCCACTGAAGATGTTGTGGATC
CATGGAATGTGGCCAGTAGTAATGACGCGGGCGTCGACTATGATAAGCTG
ATAAAACGGTTTGGCTCCAGCAAAATCGATGAGGAGCTTATCGCGCGTTT
CGAGAAAATCACGGGAAAGCCCGCCCACCACTTCATCCGAAGGGGCATGT
TCTTCTCGCACCGGGATCTTCATACGATTCTAACACTGCGCGAACAGGGC
AAACCCTTCTATTTGTACACTGGTCGCGGTCCCAGTTCCGGATCCCTGCA
CGTGGGCCACCTGGTGCCCTTCATCATGACCAAGTGGCTGCAGGAGACCT
TTGATGTGCCGCTGGTTATTCAATTGACCGACGACGAGAAGACCTTGTGG
AAGGATCTGAAAGTGGAGGATGCCATCAAGCTTGGACGTGAAAACGCCAA
GGATATTGTGGCCATTGGATTCGATGTCAACAAGACGTTCATTTTTAATA
ACCTGGAATTCGTGGGAAAATGTCCTGCCATGAATCAGAACATCATTCGC
ATCCAGAAGTGCGTTACCTTCAATCAGGTCAAGGGCATCTTTGGCTTCGG
GGACTCAGACATCATTGGCAAGATTGGTTTCCCAGCCGCTCAAGCAGCTC
CCGCGATTTCCAGCACCTTCCCCTTCATCTTCGGCAACAGGAAGTGCACT
GCCTCATCCCGTGCGCCATCGATCAGACCCATATTTCCGCATGACTCGCG
ATGTGGCTCCACGTCTTGGATTCCCAAATGCGCGCTCACCATTCGACCTT
CTTCCCGCGCTGCAGGTGCAAGACGAGATGTCGGCTAGCGACCAGACTCG
GCTGTTTATCTGACGA
FMO08935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-trp-RB | 1683 | CG9735-RB | 114..1079 | 9..965 | 4575 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9266118..9266529 | 616..205 | 2060 | 100 | Minus |
| 3R | 32079331 | 3R | 9265702..9266060 | 965..616 | 1320 | 96.4 | Minus |
| 3R | 32079331 | 3R | 9266596..9266791 | 204..9 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:10 has no hits.
FMO08935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:23:37 Download gff for
FMO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 150..1123 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:56 Download gff for
FMO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 106..1079 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:00 Download gff for
FMO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-trp-RB | 106..1079 | 1..965 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:00 Download gff for
FMO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9266596..9266795 | 1..204 | 98 | | Minus |
| 3R | 9265702..9266059 | 617..965 | 96 | <- | Minus |
| 3R | 9266118..9266529 | 205..616 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:56 Download gff for
FMO08935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5091424..5091781 | 617..965 | 96 | <- | Minus |
| arm_3R | 5091840..5092251 | 205..616 | 100 | <- | Minus |
| arm_3R | 5092318..5092517 | 1..204 | 98 | | Minus |
