FMO08948.5prime Sequence
1141 bp (1043 high quality bases) assembled on 2010-08-03
> FMO08948.5prime
CAGTCGACATGACCAACGCAACGGACATCGGTGCTAACGACGTGGAGATG
GAGGTGGATCCAACGGCGGAGACGCTGGCTGACGAGAAGAAGAACCAAGA
TGTGGCCGCCGTGCAGGAGATCCGCGAGCAGATTCGTCAGATTGAGAAGG
GGGTAGCCTCGAAAGAGTCGCGCTTCATCCTGCGCGTCCTTCGCAATTTG
CCCAACACTCGTCGCAAGCTGAACGGCGTCGTCTTCCGGAATCTTGCACA
GAGTATTTACCCCGCTGGTGCAGATCGTGAGGCGGCCGTGGCTTTGATGC
CCGCTGTGGAGAAAGACGCCACCGAGCTGCCCGATGTTCCCAAAAAACAA
GTTGCCACCAAGGCTCCAATCGCCGAGGTCGATGCCTACTTCTACCTGCT
CCTGCTGGTCAAGCTCATCGACGCCAGTGATTTAAAGCGGGCCGGAATTA
GCGCCGACGCCCTAATGGCCAAAATCTCCATCCAAAACCGACGCACCCTT
GATCTGATTGGTGCCAAGTCCTACTTCTATTTTTCAAGAGTGGCGGAGCT
AAAAAACTCACTGGAAGGCATCCGATCCTTCCTGCACGCTCGTCTGCGCA
CCGCTACGCTGCGTAATGATTTTGAAGGCCAGGCGGTGCTTATTAACTGT
TTGCTCCGCAACTACTTGCACTATGCTTTGTACGACCAAGCCGACAAGCT
GGTAAAGAAATCCGTCTACCCGGAATCGGCCAGCAACAATGAATGGGCGC
GTTTCCTGTACTATCTAGGTCGGATTAAGGCCGCTAAGCTGGAGTACAGC
GATGCCCACATGCATCTGGTCCAGGCCCTGCGTAAGTCGCCGCAGCACGC
TGCCATTGGCTTTCGTCAGACGGTTCAAAGCTATTATCGTTGTGGAGCTG
CTTTTGGGCAACATCCCGGAGCGTGTGTGTTCCGGCAAGCCGGTCTTCGC
CATCTCTGGTGCCTACTTCCAGCTCCCGCAAGCCGTGCGTCTGGCAACTT
GAAGCGCTTCGGCGACGTTGTATTCCCAATAACGGACCCAAGTTCCAACT
GACCACCATCACCTGATTATCCGGCTGCCCCCCCATGGGATCAAGACGGC
AATCGCCTCATCGGAACATATCGTACTCCAGCATCTTGGCG
FMO08948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn3-RA | 1831 | CG42641-RA | 265..1399 | 9..1136 | 5080 | 97.3 | Plus |
| Rpn3-RB | 1692 | CG42641-RB | 126..1260 | 9..1136 | 5080 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19052278..19053218 | 172..1104 | 3945 | 97 | Plus |
| 2L | 23513712 | 2L | 19052054..19052217 | 9..172 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:16 has no hits.
FMO08948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:23:28 Download gff for
FMO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dox-A2-RA | 216..1351 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:31 Download gff for
FMO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RB | 117..1252 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:29 Download gff for
FMO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn3-RB | 117..1252 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:29 Download gff for
FMO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19052045..19052217 | 1..172 | 97 | -> | Plus |
| 2L | 19052279..19053238 | 173..1125 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:31 Download gff for
FMO08948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19052045..19052217 | 1..172 | 97 | -> | Plus |
| arm_2L | 19052279..19053238 | 173..1125 | 96 | <- | Plus |
