FMO08949.5prime Sequence
1179 bp (1043 high quality bases) assembled on 2010-08-03
> FMO08949.5prime
CAGTCGACATGCCGCGACACAAAACACTAGTGAGCATTGGTCATCGTATT
ATGAAGCGCTTCAAACAGTTGGATCTCAGGGTCGACAAGGAGTTCGTCAT
CTACATGGTTCATCTGCTGGCAAGAGATCGGCGCAAAGGTCTCCTGAAGT
ACGACCTCAATAAGCCAACCGCCTGTGCCATTGAGGGTTTCGTGAATACA
ATTGTGGATAGCTATGTCAATTCGAAAGATTGCACTATGGCCAACATGAA
GATGGCTTGGGTAATGAAAAAGGGAGTAACCATAGACCTTGAATACGTCA
AGAAGAAGTACGAGGAAAAGTTCCAAACCGAACTGCAGCTGCTAATCAAG
GATATCCTTCAGTATCCCGAGACTTGCAGTAAAGTGCAGTTGGACCAGCT
CTTCGCAAAGATGCAGGTCTTCATAGTGGCCTGCTACAGTCTGGGCTCGC
CCAAGAATCATGTTCTGCTTAAGCTGACTGCCCAGGCTCTCAACAGCGTC
ATCGGTCGAAGTGACCTACAGAATTATGTCCTGAAGAAGAAGTACCATCG
GCTAGAGTATCTTCAACGCTTGTCGGCGACCGTGGGCGGCATTGTGATCT
ATAACAACGATGGCCCCGATGGAGATCGGGAGAATGTTAGAAGCGTGGTC
GATGATCTGGAAATGGCCCAGAAAAACACGGAAGCCGCATTTGCAGCCAG
TATGGGAAGGGCGGTCAAGATGCAGTCCACTTGCCAGGCGGCACTGGATG
ACCTCATAAACATAGATCATAAGGACGAGACCTTGACCTACCGCGTGCCC
CTCGAGCACCTGGATCGGCTGAACCAGTTTGCGGCGACCTACTTTATGCT
CCATCGCTGTCTGACGACTCTGAACGAACATTACCAGAGACAGTGTACCT
AATTGAAGTGGAGCATAAGCGATATCAATGCGTGATCTGCAAGATTGATG
ATACCCTATCCATGCGCACGGCTATTGATTCGGAGCTTATATTTCCGCAC
TTTGTGTACCTCTCTCAGGTGTGGGGCCATCTGACCACTACCTGAGCACA
TTGTTGAGTTAAACAGCTGAGGGAGCAGTGGAGCATTGTTCGTCGACGAC
TTGAACGACCCTGAACAAAGCTACGATTGCCCGAGCCTGCAGGCCCTCAT
ACCGATAGAAGCCAAGTCTGCACTTGAGA
FMO08949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13436-RA | 1917 | CG13436-RA | 81..1219 | 9..1144 | 5245 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20636472..20637108 | 9..645 | 3140 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20637164..20637514 | 645..994 | 1630 | 98.3 | Plus |
| 2R | 25286936 | 2R | 20637574..20637714 | 995..1131 | 290 | 90.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:24 has no hits.
FMO08949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:23:09 Download gff for
FMO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1227 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:12 Download gff for
FMO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1227 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:49 Download gff for
FMO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13436-RA | 81..1227 | 9..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:49 Download gff for
FMO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20636472..20637108 | 9..645 | 99 | -> | Plus |
| 2R | 20637165..20637514 | 646..994 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:12 Download gff for
FMO08949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16523977..16524613 | 9..645 | 99 | -> | Plus |
| arm_2R | 16524670..16525019 | 646..994 | 98 | -> | Plus |
