FMO08951.5prime Sequence
1137 bp (1057 high quality bases) assembled on 2010-08-03
> FMO08951.5prime
CAGTCGACATGTCACAGCGAAATCACAGAGTGGACCGCTTCGCCCAGATG
ACAAAGCAGGAGGAGATCATAGCCAAGAAACGGCAAGAGATCCTCGAGAA
GCAGAAGACGGCACAGCTGGCGAAGGCGGTGGCCGCGGCGCAGAACTTGG
CAGCGCAGCTGAAAACCGAGACGACTGTGGGAAAACCCATTGGCAACGAG
GTGGAGTATGAGGAGGATGCCCGATACCTGGACACCGCCGTCCAGGACAC
CTCTCTAGCGGCCGGCGAGGATGGCCTGGAGGCTGTTCACATTGAGGCCA
CGGCCAGCAAGGGAAAGACGGAGGACGCGGTGGCCCCCAAGACGCTGAAT
AGCTTCACTGGCAAAACGGGCAAGATCACATTTGGCATGAAGCGTCAGCA
GCTGCCTCAGCCCAGTGTTGAGCAGCCACCACCGAAGGTTAAAAACACTT
TCTGCAACGATGGTTCCTTTTTAGAGAACTTCAAGAAAATACTCGAAAAG
CACGAAAAGCCTCCGCAGCCCTTGATTGTTCCGCCGGTTCCAGTGCCCAG
CGCCGAGGAGAACAAAGCCGTGGACACGGAAACAGCAGAGCAGAACAACA
GTCCCCAGCTAGAGGCGGCCATCGCCATAAGCTCGGCAGCAGCCATGGCT
ACCTCCATTACGGTGACCAGCTCGGCGCCAACTCATTTGGCTTTTGGACT
ACCCGTGCAAGCAGTGCAGCCACCACCGCCGCCTCCATTTGCATTCAATC
CTACGCTTTTGCAACAGGGACCACCGCAGATGCAGCTGCCAGCTGCATTC
TTTCACGGCCATTTGCCTCTGCACTTGCATCCGGCGGCAGTTGCTCCTCC
GCCACCTCCACCGCCTCCACAGCTGCCCATCGCTCTGACCAACATGGGAC
AGATTTACATGCAGCTTGGTCCGTCTCCAGTGGAGGCTATGCAGCTGAAT
GCCATACCGGCGCCCAAAGAGTTTGACTTAATGCCATACCTAAGCCACAA
ATAAATCTGAGGCTTTCCAGAATGCCCAGCATCGGTGTCATTCGACGGAG
CAGCTGGCCTCCTGCCGGAACCGCATGTCCATGCAGTGAATCCAACCACG
CTCGCGCACCTTGTATGGAGATGGACACGGCCGAGTG
FMO08951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31550-RD | 2700 | CG31550-RD | 97..1185 | 9..1094 | 5250 | 99.2 | Plus |
| CG31550-RC | 2573 | CG31550-RC | 97..1185 | 9..1094 | 5250 | 99.2 | Plus |
| CG31550-RB | 2691 | CG31550-RB | 97..1185 | 9..1094 | 5250 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5485639..5486180 | 9..550 | 2710 | 100 | Plus |
| 3R | 32079331 | 3R | 5486233..5486781 | 549..1094 | 2375 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:39 has no hits.
FMO08951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:23:08 Download gff for
FMO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RC | 108..1206 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:46 Download gff for
FMO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RB | 97..1195 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:34 Download gff for
FMO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31550-RB | 97..1195 | 9..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:34 Download gff for
FMO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5485639..5486180 | 9..550 | 100 | -> | Plus |
| 3R | 5486235..5486791 | 551..1105 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:46 Download gff for
FMO08951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1311361..1311902 | 9..550 | 100 | -> | Plus |
| arm_3R | 1311957..1312513 | 551..1105 | 97 | | Plus |
