FMO08958.5prime Sequence
1045 bp (128 high quality bases) assembled on 2010-08-03
> FMO08958.5prime
CAATCCACATGGTAAACTTTGTGCACCCCGAGGAAATGTATCTCTTTGTG
GAGAGCATTCATCCATTTGAGGTGCGTGAGGTGGGCAGCCCGAAGTGGCT
GGAGGTGCACGAGATGATCCTCGGGCTGATCCAGCAGGCCGCCTTGGAGC
TGTCCCATAATCGCGAGGAGGAGGTGAAGGAGTTCCTCATCTCGCGCGAC
AAGCTACGCGTGCTGATCCACGAAGCCTATTGCGTAACGTTGTGGAAGAC
GCGTGTTCTGCCGCATCTGCTGGAGATTGATCCCAATCCGCAGGCCACGT
TCCTTATCTACACAGTGCTATATCACGAGGCTGCTTTGGTAGCGCTTCTG
GATGTGTGTCTCTACCATCCCAGTGGCTGTGAGACGCTGCACGAGTCTGT
GCTGGATTTGATTGACTATTGCGCCCAGGCCATTTCCCAGGTCATTGGCT
TGGTCAGCATGGGTTACCTCGATAACGAGACAAAGCTGGACGTGAATGAG
GCAGTGCTCACGGAGCTGGAGCGCCAGAAGCACGACTTTATCTATAAGAT
TGGACTGCGCTGCATCTCAGTGCTGAACTACATAGCAGATAATGTGACAT
TGTTTCATCTAACCGCCGCACGCCGTTTGCTGGTGACCCATGACATTCCG
TGGCTCATGGCAATGTACTTATCTTCCGTCCGTGGCAGAGAAAGACCAGC
AGGGCATTCAGAAGTTCATCGACGAGAAGTGGACCAATGTGGACGACGTC
ACCGAGATTGTCAAGCCAGAGGCGCATGCCTGGTTTTGTGTGCGTCAGCT
GCTCCTTAATCCTCAAATCATGGAGAACTATGCTTCAACGAGCACGCTGC
AAGCAGTTACACAGCTTTTGGGTCTCATGCACGAGCCGCTGCTGGACCAG
CTGCCGCCACTATAGAGCTAATGGTGGTCCTAAGCCCCTGACCGCACACG
GAAATACGGCAATACACACTCGCTCTTTGTTGGAGACTTTCGTCTATCCG
GAAGAACCTGCTCAAGATGTCTAGGAAAAGGCGGTTTCTATCAAA
FMO08958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zmynd10-RA | 1497 | CG11253-RA | 79..1124 | 9..1043 | 4280 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13025689..13026359 | 678..9 | 3065 | 97.5 | Minus |
| 3L | 28110227 | 3L | 13025442..13025630 | 863..678 | 750 | 96.8 | Minus |
| 3L | 28110227 | 3L | 13025305..13025379 | 936..863 | 265 | 93.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:43 has no hits.
FMO08958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:23:19 Download gff for
FMO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11253-RA | 71..1028 | 1..951 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:43 Download gff for
FMO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11253-RA | 71..1028 | 1..951 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:03 Download gff for
FMO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zmynd10-RA | 71..1028 | 1..951 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:03 Download gff for
FMO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13025298..13025377 | 865..942 | 92 | <- | Minus |
| 3L | 13025440..13025629 | 679..864 | 96 | <- | Minus |
| 3L | 13025689..13026363 | 1..678 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:43 Download gff for
FMO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13018540..13018729 | 679..864 | 96 | <- | Minus |
| arm_3L | 13018398..13018477 | 865..942 | 92 | <- | Minus |
| arm_3L | 13018789..13019463 | 1..678 | 96 | | Minus |
