Clone FMO08961 Report

Search the DGRC for FMO08961

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:89
Well:61
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12307-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08961.5prime Sequence

572 bp (572 high quality bases) assembled on 2010-08-03

> FMO08961.5prime
CAATCGACATGAAAAACTCAACTGTGCAAGACAGTTCACCGCAAGTGCCA
CAGAATGGCATGGTCACCTATGGCAGCGGGCTCGTCTTTGGCGGGAAAGT
TTATCCGGTATTGGTGGACGGAAAGCCAATACAGCCACCCTTAGGTGCTC
ATCAGGCAGCAATGCAACAGCGCATGCAGATGCAGCAGGTTCAGCCACAG
GCGCCACATACCAACTGCCCCAAGTCCATTGTCCAACAACCTATATATCA
ACGAATGGAGACCCGGTATCCTGCACCCTCATACATGTCCAAGCCAAGCC
AACAGAGCTCTGTGAGTTGTCCTGGCCCAGTCATGGTGCAGCAGCACTCG
CCGTCTAACAATCTGGCGATGATGCAACCGTTGCAGGCGCATATTTTACA
GCGCCAGCAAATGCAAACCTCCATGGGCAGTCCTTGCGGCTACTACAACC
TGCCAACGAATGCGGGTGGTGATTCCTGCGGCTGGGACGGCTATGCCATG
ATGCAGCCAATGGATGCCAACAAGCCGTATACCTTTGGCTGGAGTCTTAC
CGATGCAAGCTTTCTAGACCAT

FMO08961.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12307-RA 680 CG12307-RA 72..617 9..554 2670 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11651394..11651939 554..9 2670 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 20:13:02 has no hits.

FMO08961.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:58 Download gff for FMO08961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12307-RA 55..611 1..557 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:49 Download gff for FMO08961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12307-RA 64..617 1..554 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:56 Download gff for FMO08961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12307-RA 64..617 1..554 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:56 Download gff for FMO08961.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11651394..11651946 1..554 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:49 Download gff for FMO08961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11651394..11651946 1..554 98   Minus