FMO08967.5prime Sequence
935 bp (114 high quality bases) assembled on 2010-08-03
> FMO08967.5prime
CAATCCACATGCCGGCGATGGATGTGGACACTGCTCTCTTAACCATAGGT
TATGGGCTTGGTCAGGTGATCATTTTCATGGTGAGTTTCTTCATATACAT
GTACTCCGTAACTGACTCCATGACTGCTGGCTATCTCGTGGTCCTGACCT
CCTGCGATTTCTATACCTCGCCTAAAGAGAACACCCTATTGGCCATTTCC
CTGCTGGGCGGGATGGTGGCTTCCGGATTGTTATTGGCTTCCTGGCGGAC
AGGTATGGCCGCAAGTTCGTTATCCGATTGGCACTCGTATGAGCGCTGTC
CTTCTCGGTGATTTCTGCTTTAGTGCCGGATCACTATTCGCTTTCTGTGA
TTCTGATTATTGTTGGAACTTTCCTCTCGGCGGTTGCCTCTTTGCAGGTA
AGATTCCTCGGGGAGTTCCACGCAATCAGGTGGCGGCCAATAACGGTAGC
CATTTGTAACCAATCTCACGGTCTAGCTCTCATCTACTGTCCTCTGGTGG
CCATGGCTATTCTGCCCAGAACTTAATGTGGACCTCAACACCAGCTACAA
TCTACGCGTATGGCGATTCCAAATGATGTTCTTCATGATTCCCGGCTGGT
TGGCCCTCGTCTGAATTTGTCTGGTGCCGGAGACACCACCTTTTCTCATG
TCTGTCAATCGGCCGGACAAGGCCCTCCTGGCGCTTAATGGATATGCCGG
ATGAACTTGAATAAATGGGAGGACGTCAACATATCTTTGATTGAAGAGAA
TCATGCACAAACGATCAGGAAGGCTTCTGGAAAACTGTGTGGTACGAGTA
TAAGCTGCTCTTTTCTATACTTCACGTCTTCAAGTTTTTTTATTTGTCTC
TTTCTTATTTTTGGATATTTTTTCATCTTTTGTATTGGGCATCTGGTTCC
CGCTATCTACAAAATGGAAACTTCTGGCTTCCCCC
FMO08967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33233-RC | 1612 | CG33233-RC | 71..998 | 9..929 | 3610 | 93.3 | Plus |
| CG33233-RE | 1049 | CG33233-RE | 498..1002 | 373..873 | 1945 | 93.1 | Plus |
| CG33233-RE | 1049 | CG33233-RE | 71..435 | 9..372 | 1590 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2660194..2660688 | 373..864 | 1795 | 93.1 | Plus |
| 3L | 28110227 | 3L | 2659805..2660131 | 47..372 | 1375 | 95.4 | Plus |
| 3L | 28110227 | 3L | 2659709..2659750 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:24 has no hits.
FMO08967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:51 Download gff for
FMO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..981 | 9..912 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:40 Download gff for
FMO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..981 | 9..912 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:26 Download gff for
FMO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33233-RC | 71..981 | 9..912 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:26 Download gff for
FMO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2659709..2659748 | 9..48 | 100 | -> | Plus |
| 3L | 2659807..2660131 | 49..372 | 95 | -> | Plus |
| 3L | 2660194..2660698 | 373..873 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:40 Download gff for
FMO08967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2659709..2659748 | 9..48 | 100 | -> | Plus |
| arm_3L | 2659807..2660131 | 49..372 | 95 | -> | Plus |
| arm_3L | 2660194..2660698 | 373..873 | 93 | == | Plus |
