Clone FMO08969 Report

Search the DGRC for FMO08969

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:89
Well:69
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8136-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08969.5prime Sequence

888 bp (888 high quality bases) assembled on 2010-08-03

> FMO08969.5prime
CAGTCGACATGTCTAGTAGCAGTCGCCGCGTCATGTGGAAGCTCAACGAG
GAGGAGGAGACATTCGACTCCTTGGTCAATTATCGGCGGCTTCCTTCGCG
CAGCCTAAACCGAAGTCAGGTGACCGATGTGCCCACCAAGGGACACACTA
CCTCCGAAAATTGCCAGCTGCCAGCGCAAGAGTTGGAAACAAAGAGCGCC
ACCAACGAACAAGGTGCATTGGGCATAATGTCGGTTAGCCTACCGCAAAC
AACCAGGAATTCCCATCAATCGTCGGCCACGTCACTGCCGGAGGCCAAGG
GATGCACTGCCACCGAAAACTGCCAGTTGCTAGCGCAAGAGGCGGAAACA
AAGAACGCCAGCAACGAACAAGGTGGATTGGGCAAAATGTCGGTTAGCCT
GCCGCAACAAAACTGGAACGCCAATCAATCGTCGGCCACGTCACTGCCGG
AGGCCAAGGAGATCAGCTCCAAAGAGCAGGCGATCATCTACTGGCGGCGT
CTTTTCGATGGTATCCACAAGCGCCAGCGTGGCGAAAGAAAAGTTGCAGC
AATGCAGCCCGAAAATACCACAGATGTCGTGCTGACGTCCAAGCCAAACC
TGGCATTGCGCTACAAGCCCTCCCATGAGTCGCTTAAAAACAAGCGGATC
AAGGACCTGGCTCCTGAACGATGCCCGAGCACGTCCCGGGGATCAACGTC
CTGCAAACTGGTATCGGACCTCAGATGGAGACGTTCAGCCTGCCGCCGCA
GCAGACGTGTGTGGTGCGCGAGGTGGAGCCTCTGTTTGGCCAGCGCCGAC
CCATGTTGTTGGCCAACGACACGGATTCGTGCTACTCCCGGCGAGCTGGA
GGTCCCCAAAAACAGTCCCGTCCAGGAGCCAGGACTCT

FMO08969.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8136-RD 1612 CG8136-RD 204..1080 9..885 4310 99.5 Plus
CG8136-RC 1615 CG8136-RC 207..1083 9..885 4310 99.5 Plus
CG8136-RB 1620 CG8136-RB 212..1088 9..885 4310 99.5 Plus
CG8136-RD 1612 CG8136-RD 331..495 295..459 510 87.3 Plus
CG8136-RD 1612 CG8136-RD 490..654 136..300 510 87.3 Plus
CG8136-RC 1615 CG8136-RC 334..498 295..459 510 87.3 Plus
CG8136-RC 1615 CG8136-RC 493..657 136..300 510 87.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8721643..8722519 9..885 4260 99.5 Plus
3R 32079331 3R 8721929..8722093 136..300 510 87.3 Plus
3R 32079331 3R 8721770..8721934 295..459 510 87.3 Plus
Blast to na_te.dros performed on 2014-11-28 19:16:56 has no hits.

FMO08969.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:48 Download gff for FMO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8136-RC 201..1086 1..888 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:24 Download gff for FMO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8136-RB 206..1091 1..888 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:21 Download gff for FMO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8136-RB 206..1091 1..888 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:21 Download gff for FMO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8721637..8722522 1..888 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:24 Download gff for FMO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4547359..4548244 1..888 98   Plus