FMO08978.5prime Sequence
1153 bp (1061 high quality bases) assembled on 2010-08-03
> FMO08978.5prime
CAGTCGACATGTCTGCCAGCCACAAACAGCGTTATAAAAATGCCGCCTTG
GACTCCACAGAGATGCGTCGTCGTCGCGAGGAGGTGGGCATCCAGTTGCG
AAAAAACAAACGCGAACAGCAGCTCTTTAAGCGACGCAATGTGGTTCTTG
AGCCGGCTACATCCTCAACATCAGCCGGAGTGGAGAGCAACACCGATAAC
GAACAGCAGGCTGCCGACATGCACATGGCTGACAGCAGCACTGGCGGTCA
AAACGAGGAAGCTGCTGGAAGCGGGGCACAGCCATCCGTAATCAACGAGG
AAATGATTCAAATGCTCTTCAGTGGACGTGAAAACGAACAGCTTGAGGCG
ACTCAAAAGTTCCGCAAACTGCTGTCCCGCGATCCCAATCCTCCCATTGA
GGAAGTCATCCAGAAGGGGATAGTGCCACAGTTTGTCACTTTTTTGCGAA
ATAGCGCAAATGCCACGCTGCAGTTCGAGGCCGCCTGGACGCTAACGAAC
ATCGCATCGGGCACCTCGCAACAGACCAAGGTGGTTATCGAGGCCGGGGC
AGTGCCTATCTTCATTGATTTGCTCTCCAGTCCCCATGATGATGTTCAGG
AACAGGCCGTGTGGGCCCTAGGCAACATAGCCGGTGACTCACCCATGTGT
CGAGACCATTTGCTCGGCTCCGGCATTCTAGAGCCTCTCCTGCATGTATT
GAGCAACTCGGATCGCATTACCATGATACGGAATGCGGTGTGGACACTTT
CAAACTTGTGCCGCGGCAAAAGCCCTCCCGCAGACTTTGCCAAAATTAGC
CATGGTCTACCAATACTGGCACGGTTGCTGAAGTACACTGATGCGGATGT
ACTAAGCGATACTTGCTGGGCCATAGCTACCTGTCAGATGGTCCCAATGA
TAAAATCCAGGCTGTAATTGATGCGGGTGTTTGCCGTCGCCTGGTTGAGC
TGCTATTACATCCTCAGCAGAACGTGAGCACAGCTGCTCTGAGGCCGTGG
GCAATATTGTGACAGCGACGATCAGCAGACCAGTGATATTGGGGTACACG
CTTGACCTGCATAGCCACCTGCTGCATCGAACGCCGAAACAATCAGAAGG
AGTCTGCTGTACATCTCAATCGTGCAGTCGGCAATTCGTGAACGAATCCA
GGC
FMO08978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha1-RA | 2322 | CG8548-RA | 109..1269 | 5..1153 | 5280 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19808196..19808684 | 206..694 | 2430 | 99.8 | Plus |
| 3L | 28110227 | 3L | 19808744..19809007 | 695..957 | 1270 | 99.6 | Plus |
| 3L | 28110227 | 3L | 19807933..19808138 | 5..210 | 1015 | 99.5 | Plus |
| 3L | 28110227 | 3L | 19809075..19809201 | 958..1077 | 305 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:30 has no hits.
FMO08978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:43 Download gff for
FMO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 91..1213 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:09 Download gff for
FMO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 106..1228 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:23 Download gff for
FMO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha1-RA | 106..1228 | 1..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:23 Download gff for
FMO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19808200..19808684 | 210..694 | 99 | -> | Plus |
| 3L | 19808744..19809007 | 695..957 | 99 | -> | Plus |
| 3L | 19807930..19808137 | 1..209 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:09 Download gff for
FMO08978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19801030..19801237 | 1..209 | 98 | -> | Plus |
| arm_3L | 19801300..19801784 | 210..694 | 99 | -> | Plus |
| arm_3L | 19801844..19802107 | 695..957 | 99 | -> | Plus |
