Clone FMO08979 Report

Search the DGRC for FMO08979

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:89
Well:79
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7342-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08979.5prime Sequence

1189 bp (1060 high quality bases) assembled on 2010-08-03

> FMO08979.5prime
CAGTCGACATGTTGGAGGTGGACAAGATCCTAGAGAAGTGCGGCGACTTC
AGCCGTCTGCAGATGATAATGCTTCTGCTCTTCTGTGTGATCAACGTTCT
TTCAGCCCTGCACTACTACTCCCAAACTATCATCAGCTTCGTTCCCAAAT
ACTGGTGTGCAGATGGTTTGCCCGCCAGCATTGAGTCTCCAGTTGATTCG
AGCTGCCTGCCATTGAACCGGAATATTAGCACTCCGAATACGTGCTACAG
CTATAACTACGAGCTATACATGGGCTACCAGAGCTTTCCCAGCGAAATGG
ATTGGGTGTGCGCCGATGCCTGGAAACTCACGCTCGGCCAGTCCATGTTC
TTTGTGGGCTCTGTGGTGGGCTCTATGGTTCTGGGCTACCTGGCGGATGT
GGTTGGACGTCTGCCCATTCTGATCGTGGCCAACCTGATTGCTATGACAG
GCAATCTACTTACCATATGGAGCACCAATGTCACGCTTTTCTGTATGTTT
CGCATGATTTCCGGCATTGCTACGGATAGCAACTTTGTGATGATGTACAT
TTTGGTTATGGAGTACATGCGGCCATCGGTGCGCACCCTTGGCCTGAGCA
TCTGCATTGGATTTTTCTACTGTCTAGGCTCGATGGCGGCACCCTGGATC
GCCGTGCTCATGCGCAGCTGGCGGGGATTCCTACTGACCACCTCCTTGCC
CCTGCTGGTGGTGCCATTCTTCTACCTCATCGTGCCTGAAAGCATTCAGT
GGCTGATTTCCAAGCAGAAGTATGACAGCGCAGTTGTCTGCCTCAAAAGG
GTAGCCAAGATAAATGGACGGCACGTGGAAGAGAGTGCCTACGCGGAGTT
CATCGAGGAGTGTAAGTGCAGTCAGCAAACCAGAAGGCATCACCCCATCT
ACTTGATCTGTTCCAAACGCCCCGACTCCGTCGCCATACCCTCATCCTCT
TCTTCAAGTCCATGGTCATCACCTCTGCTACGATGCGGTTTCTCGCAACG
TTCAGGCCTTGGCATTTCGCCATTGTGATGTTCTCGCTGAACGCCACCGC
CATTCTGCCGGCGTGTCTGCTCATCATCGCCCTTCAAAATCGCATCGGTC
GCGAAGGGATGGCGTCCCGCCTTCTCTGTCCGGCTGATGGCATTTTCATC
TCGGTCACCGGGAGGGCATCTCTTTGGCCGCCCTCTGCC

FMO08979.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7342-RB 2190 CG7342-RB 371..1548 9..1188 5485 98.3 Plus
CG7342-RA 2135 CG7342-RA 316..1493 9..1188 5485 98.3 Plus
CG6231-RF 2730 CG6231-RF 1343..1445 941..1040 185 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19604315..19604716 154..555 2010 100 Plus
3R 32079331 3R 19604877..19605283 555..960 1985 99.8 Plus
3R 32079331 3R 19604111..19604259 9..157 745 100 Plus
3R 32079331 3R 19605349..19605549 961..1161 550 90.2 Plus
Blast to na_te.dros performed on 2014-11-28 21:22:06 has no hits.

FMO08979.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:42 Download gff for FMO08979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7342-RA 1..1178 9..1189 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:47 Download gff for FMO08979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7342-RA 312..1493 1..1189 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:23 Download gff for FMO08979.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7342-RA 312..1493 1..1189 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:23 Download gff for FMO08979.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19604107..19604256 1..154 97 -> Plus
3R 19604316..19604716 155..555 100 -> Plus
3R 19604878..19605283 556..960 99 -> Plus
3R 19605349..19605573 961..1189 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:47 Download gff for FMO08979.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15429829..15429978 1..154 97 -> Plus
arm_3R 15430038..15430438 155..555 100 -> Plus
arm_3R 15430600..15431005 556..960 99 -> Plus
arm_3R 15431071..15431295 961..1189 91   Plus