FMO08979.5prime Sequence
1189 bp (1060 high quality bases) assembled on 2010-08-03
> FMO08979.5prime
CAGTCGACATGTTGGAGGTGGACAAGATCCTAGAGAAGTGCGGCGACTTC
AGCCGTCTGCAGATGATAATGCTTCTGCTCTTCTGTGTGATCAACGTTCT
TTCAGCCCTGCACTACTACTCCCAAACTATCATCAGCTTCGTTCCCAAAT
ACTGGTGTGCAGATGGTTTGCCCGCCAGCATTGAGTCTCCAGTTGATTCG
AGCTGCCTGCCATTGAACCGGAATATTAGCACTCCGAATACGTGCTACAG
CTATAACTACGAGCTATACATGGGCTACCAGAGCTTTCCCAGCGAAATGG
ATTGGGTGTGCGCCGATGCCTGGAAACTCACGCTCGGCCAGTCCATGTTC
TTTGTGGGCTCTGTGGTGGGCTCTATGGTTCTGGGCTACCTGGCGGATGT
GGTTGGACGTCTGCCCATTCTGATCGTGGCCAACCTGATTGCTATGACAG
GCAATCTACTTACCATATGGAGCACCAATGTCACGCTTTTCTGTATGTTT
CGCATGATTTCCGGCATTGCTACGGATAGCAACTTTGTGATGATGTACAT
TTTGGTTATGGAGTACATGCGGCCATCGGTGCGCACCCTTGGCCTGAGCA
TCTGCATTGGATTTTTCTACTGTCTAGGCTCGATGGCGGCACCCTGGATC
GCCGTGCTCATGCGCAGCTGGCGGGGATTCCTACTGACCACCTCCTTGCC
CCTGCTGGTGGTGCCATTCTTCTACCTCATCGTGCCTGAAAGCATTCAGT
GGCTGATTTCCAAGCAGAAGTATGACAGCGCAGTTGTCTGCCTCAAAAGG
GTAGCCAAGATAAATGGACGGCACGTGGAAGAGAGTGCCTACGCGGAGTT
CATCGAGGAGTGTAAGTGCAGTCAGCAAACCAGAAGGCATCACCCCATCT
ACTTGATCTGTTCCAAACGCCCCGACTCCGTCGCCATACCCTCATCCTCT
TCTTCAAGTCCATGGTCATCACCTCTGCTACGATGCGGTTTCTCGCAACG
TTCAGGCCTTGGCATTTCGCCATTGTGATGTTCTCGCTGAACGCCACCGC
CATTCTGCCGGCGTGTCTGCTCATCATCGCCCTTCAAAATCGCATCGGTC
GCGAAGGGATGGCGTCCCGCCTTCTCTGTCCGGCTGATGGCATTTTCATC
TCGGTCACCGGGAGGGCATCTCTTTGGCCGCCCTCTGCC
FMO08979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7342-RB | 2190 | CG7342-RB | 371..1548 | 9..1188 | 5485 | 98.3 | Plus |
CG7342-RA | 2135 | CG7342-RA | 316..1493 | 9..1188 | 5485 | 98.3 | Plus |
CG6231-RF | 2730 | CG6231-RF | 1343..1445 | 941..1040 | 185 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19604315..19604716 | 154..555 | 2010 | 100 | Plus |
3R | 32079331 | 3R | 19604877..19605283 | 555..960 | 1985 | 99.8 | Plus |
3R | 32079331 | 3R | 19604111..19604259 | 9..157 | 745 | 100 | Plus |
3R | 32079331 | 3R | 19605349..19605549 | 961..1161 | 550 | 90.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:22:06 has no hits.
FMO08979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:42 Download gff for
FMO08979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7342-RA | 1..1178 | 9..1189 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:47 Download gff for
FMO08979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7342-RA | 312..1493 | 1..1189 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:23 Download gff for
FMO08979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7342-RA | 312..1493 | 1..1189 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:23 Download gff for
FMO08979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19604107..19604256 | 1..154 | 97 | -> | Plus |
3R | 19604316..19604716 | 155..555 | 100 | -> | Plus |
3R | 19604878..19605283 | 556..960 | 99 | -> | Plus |
3R | 19605349..19605573 | 961..1189 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:47 Download gff for
FMO08979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15429829..15429978 | 1..154 | 97 | -> | Plus |
arm_3R | 15430038..15430438 | 155..555 | 100 | -> | Plus |
arm_3R | 15430600..15431005 | 556..960 | 99 | -> | Plus |
arm_3R | 15431071..15431295 | 961..1189 | 91 | | Plus |