Clone FMO08987 Report

Search the DGRC for FMO08987

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:89
Well:87
Vector:pMK33-CFH-BD
Associated Gene/TranscriptUbc84D-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO08987.5prime Sequence

485 bp (20 high quality bases) assembled on 2010-08-03

> FMO08987.5prime
CAATCCACATGGCTGCCACTCGTCGTCTGACACGGGAACTCTCCGATCTG
GTTGAGGCCAAGATGAGCACTCTGCGCAACATCGAGAGTAGCGATGAGTC
CCTGCTGATGTGGACGGGTCTTTTGGTTCCGGAAAAGGCGCCCTACAACA
AGGGCGCCTTCCGCATCGAAATCAACTTCCCGCCCCAGTATCCCTTTATG
CCACCAAAGATCCTATTCAAGACCAAAATCTATCACCCCAACGTGGATGA
GAAGGGGGAGGTGTGCCTGCCCATCATCACCACAGACAACTGGAAGCCCA
CAACGCGCACAGAGCAGGTGCTCCAGGCCCTGGTAGCCATCGTCCACAAC
CCGGAGCCAGAACATCCGCTTCTTTCTGACCTGTCCGAGGAGTTCGTAAG
GGAGCTCACGAAGTTCATGAAGACGGACGAAGAGTTCACCAAGAAGAATG
CGGAGAAGCGACCAGAGGCAAGCTTTCTAGACCAT

FMO08987.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc84D-RA 637 CG12799-RA 99..557 9..467 2190 98.5 Plus
Ubc10-RA 999 CG5788-RA 401..746 101..446 365 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7518900..7519358 467..9 2190 98.5 Minus
2R 25286936 2R 17788665..17789010 446..101 365 73.7 Minus
Blast to na_te.dros performed on 2014-11-28 21:58:34 has no hits.

FMO08987.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:33 Download gff for FMO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc84D-RA 1..462 9..470 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:39 Download gff for FMO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc84D-RA 94..562 3..472 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:44 Download gff for FMO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc84D-RA 94..562 3..472 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:44 Download gff for FMO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7518895..7519363 3..472 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:39 Download gff for FMO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3344617..3345085 3..472 97   Minus