FMO08990.5prime Sequence
743 bp (743 high quality bases) assembled on 2010-08-03
> FMO08990.5prime
CAGTCGACATGGAGTACGTTCAGTTCAAAAACGGATCCCCAGTCTACTAC
AAGGAGCAGCCAGACCTCAATGAGTGCATTCAATACCAACCCTACCGTAC
AACTCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGA
CAGAGTCCTACTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCA
GGACACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCAT
GCTGCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACA
AGCAATTCAACTCGCCCATTGGCCTGTACTCCAACAACAACATCGAGGAC
ACCATCAGATCCACAGTTCCCTTCGCCACAAGCGAAAGCAATCGCTTGAA
GGACAGTCCTTTGCATCGTCCTTTGCCAACAAAACTTAACGGCTATAAGA
AAACTGTCCAGTACGATCCCAGGAACAGCGAAACCTACAGAGCCATTCAA
GAAGAGGGCGGCTACAGCAACTATGGCCAATCCTCGCCACAGGAAGTGAC
CATTCCTGTGCAGACTAAGGTCTATCAGCCCAATAGATTGGTTCCAGGAA
AGAAACCAGTATCAGCGCCAGTATCCCGGCCGCCGTACAATGTGGTAAAC
ACCCACGATGAGAACATACGCCAGAGCGGCTCCTTCAATCGTCTCATGTA
CAGCGTGATTGGTGCCACCGAGTACGCAAGCTTTCTAGACCAT
FMO08990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp66-RA | 1212 | CG6416-RA | 173..889 | 9..725 | 3585 | 100 | Plus |
| Zasp66-RJ | 1352 | CG6416-RJ | 313..1029 | 9..725 | 3585 | 100 | Plus |
| Zasp66-RF | 1714 | CG6416-RF | 756..1391 | 90..725 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8634579..8634785 | 86..292 | 1020 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8637438..8637598 | 442..602 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 8638267..8638350 | 642..725 | 420 | 100 | Plus |
| 3L | 28110227 | 3L | 8630555..8630635 | 9..89 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 8635002..8635081 | 291..370 | 400 | 100 | Plus |
| 3L | 28110227 | 3L | 8635681..8635763 | 371..453 | 370 | 96.4 | Plus |
| 3L | 28110227 | 3L | 8638155..8638198 | 601..644 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:04 has no hits.
FMO08990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 15:22:29 Download gff for
FMO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6416-RA | 167..883 | 9..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:27 Download gff for
FMO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RJ | 313..1029 | 9..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:19 Download gff for
FMO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RJ | 313..1029 | 9..725 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:19 Download gff for
FMO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8630555..8630635 | 9..89 | 100 | -> | Plus |
| 3L | 8634583..8634783 | 90..290 | 100 | -> | Plus |
| 3L | 8635002..8635081 | 291..370 | 100 | -> | Plus |
| 3L | 8635681..8635752 | 371..442 | 100 | -> | Plus |
| 3L | 8637439..8637598 | 443..602 | 100 | -> | Plus |
| 3L | 8638157..8638195 | 603..641 | 100 | -> | Plus |
| 3L | 8638267..8638350 | 642..725 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:27 Download gff for
FMO08990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8630539..8630698 | 443..602 | 100 | -> | Plus |
| arm_3L | 8631257..8631295 | 603..641 | 100 | -> | Plus |
| arm_3L | 8631367..8631450 | 642..725 | 100 | | Plus |
| arm_3L | 8623655..8623735 | 9..89 | 100 | -> | Plus |
| arm_3L | 8627683..8627883 | 90..290 | 100 | -> | Plus |
| arm_3L | 8628102..8628181 | 291..370 | 100 | -> | Plus |
| arm_3L | 8628781..8628852 | 371..442 | 100 | -> | Plus |
