FMO09005.5prime Sequence
446 bp (446 high quality bases) assembled on 2010-08-09
> FMO09005.5prime
CAGTCGACATGTCGAAGAGAGGACGTGGAGGTACCGCGGGAGGCAAGTTC
CGCATCTCCCTCGGTTTGCCCGTGGGCGCCGTGATGAACTGTGCCGACAA
CACCGGAGCCAAGAACCTGTACGTGATCGCCGTCCACGGAATCCGCGGTC
GCCTTAACCGTCTGCCCGCCGCTGGTGTCGGCGACATGTTCGTGGCCACC
GTGAAGAAGGGAAAGCCCGAGCTCAGGAAGAAGGTCATGCCTGCCGTGGT
TATTCGGCAGCGCAAACCGTTCAGGAGGAGGGACGGGGTGTTTATATACT
TTGAGGACAATGCCGGGGTAATAGTAAACAACAAGGGCGAAATGAAGGGC
TCGGCCATCACTGGACCGGTGGCCAAGGAATGCGCCGATCTGTGGCCCCG
TATTGCATCCAATGCAAGCTCTATAGCCGCAAGCTTTCTAGACCAT
FMO09005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL23-RA | 542 | CG3661-RA | 68..487 | 9..428 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22854645..22854860 | 20..235 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 22855443..22855639 | 232..428 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:26 has no hits.
FMO09005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:28 Download gff for
FMO09005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23-RA | 66..496 | 1..433 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:33 Download gff for
FMO09005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23-RA | 61..491 | 1..433 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:54 Download gff for
FMO09005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23-RA | 61..491 | 1..433 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:54 Download gff for
FMO09005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22854645..22854858 | 20..233 | 100 | -> | Plus |
| 2R | 22855445..22855643 | 234..433 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:33 Download gff for
FMO09005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18742168..18742381 | 20..233 | 100 | -> | Plus |
| arm_2R | 18742968..18743166 | 234..433 | 99 | | Plus |
