FMO09016.5prime Sequence
728 bp (728 high quality bases) assembled on 2010-08-09
> FMO09016.5prime
CAGTCGACATGCAGCTTTTCACACGAGTTATCCTGTTGGCCGTGACCATT
TTCAGCGTCAGTGCCGTGCCGCGTTTTGGAGAAGATATTGGTCTGGAGGA
GGTCCTATTCCGCATGGTCCTTGGTGAGGCTGAGGGTCGAGGTCTGACTC
CTGCTGCCCAGACTTGTGCCAACATCTACCTGAACACCACCCAGAAGAAC
GGCGATAAGTTGGCCAATGCCACCAATGCTTGCGAGGAGGCAGCCAATCG
CACCAATGTCGCCTACACCCAGACCAGCAACTCCACCATCAACCAGATCC
GTCTCCAGTTGTTGACCCTGGAGCAGAACCTGCAGCTGTGCCGCAACGAG
ACCGATTCGGCTATTTTCCTGAACTGCACTGTGTCCACTTTCGACAAGAA
CCTCCAGCTGCTGGACACCTCCAACTCGCAGGCCTACCGTGCTCAGTCCC
AGTTCGTTTCCAATGCCACTCAGATGAATGCCGAGAAATCGAACTGCATC
AGCTCCGCTGTTAGCGAGGCCAAGGTTCAGTCCATCCAGGCGGCCAACGA
CTTTAATTCGTGTCTGGACAAGATCCCAGCCCAGCGTGAGGTGCCACAAA
AGATGGAGCAGCAGCTGAGAGAGCAGCAGCAGGAGAAGCCCACCCAGATA
ACCAAAGAGCAAGTGTCTGCGAAGCCACAGCTGATGTTCGAAGATCTGCC
TTTGACCAACGCAAGCTTTCTAGACCAT
FMO09016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5084-RB | 1182 | CG5084-RB | 27..730 | 7..710 | 3520 | 100 | Plus |
| CG5084-RA | 773 | CG5084-RA | 27..730 | 7..710 | 3520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18019046..18019378 | 57..389 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 18019439..18019759 | 390..710 | 1605 | 100 | Plus |
| 2R | 25286936 | 2R | 18018691..18018746 | 7..62 | 265 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-28 19:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2387 | 594..662 | 110 | 65.7 | Plus |
FMO09016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:23 Download gff for
FMO09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5084-RA | 45..756 | 1..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:50 Download gff for
FMO09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5084-RA | 22..740 | 1..724 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:44 Download gff for
FMO09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5084-RA | 22..740 | 1..724 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:44 Download gff for
FMO09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18018686..18018740 | 1..56 | 92 | -> | Plus |
| 2R | 18019046..18019378 | 57..389 | 100 | -> | Plus |
| 2R | 18019439..18019762 | 390..715 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:50 Download gff for
FMO09016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13906191..13906245 | 1..56 | 92 | -> | Plus |
| arm_2R | 13906551..13906883 | 57..389 | 100 | -> | Plus |
| arm_2R | 13906944..13907267 | 390..715 | 99 | -> | Plus |
