FMO09019.5prime Sequence
1180 bp (1063 high quality bases) assembled on 2010-08-09
> FMO09019.5prime
CAGTCGACATGAGTGGCGTCCAGACCGCCGAAGCCGAGGCGCAGGCCCAA
AACCAAGCGAATGGCAACAGGACCAGGTCGCGTTCCCACTTGGACAACAC
AATGGCCATCCGACTGCTGCCGTTGCCCGTGCGAGCCCAGCTATGTGCCC
ACTTGGATGCCCTAGACGTATGGCAACAGCTGGCCACGGCCGTAAAACTC
TATCCCGACCAGGTGGAGCAGATAAGCAGCCAGAAGCAGCGTGGCCGCTC
AGCCTCCAATGAGTTCCTCAACATTTGGGGCGGTCAGTACAATCACACGG
TGCAAACATTGTTTGCTTTGTTCAAAAAATTGAAGCTTCATAACGCCATG
CGTCTGATCAAAGATTACGTTAGCGAGGATCTGCACAAGTACATACCGAG
GAGCGTGCCCACCATCAGCGAGCTGCGCGCTGCTCCCGATTCCAGTGCCA
AAGTAAACAACGGCCCGCCGTTTCCCTCCTCCTCGGGCGTCAGCAACTCA
AACAACAATCGCACCAGCACAACGGCAACGGAGGAGATACCCAGCCTGGA
GTCCCTGGGCAATATACACATTAGCACCGTACAGCGGGCAGCCGAATCCT
TGCTGGAGATCGATTATGCGGAGCTAGAAAACGCCACGGACGGCTGGAGT
CCGGATAATCGACTGGGACAGGGCGGATTCGGAGACGTGTACCGCGGCAA
ATGGAAGCAACTGGACGTGGCCATCAAGGTGATGAACTACCGCAGTCCCA
ACATCGACCAGAAAATGGTGGAGCTGCAGCAGAGCTACAACGAACTCAAG
TATTTAAACAGCATCCGGCACGACAATATCCTGGCCCTCTACGGATACAG
CATCAAAGGTGGTAAGCCGTGCCTCGTCTACCAGCTGATGAAGGCGGCTC
CCTGGAGGCTCGTTTACGAGCGCATAAGCACAAAACCCACTACCAGCACT
CACCTGGCAGCAGCGGTTTAGCATCAGCCTCGGCACGGCTAGAGGCATCT
ACTTTCTGCACACGCGCGAGGCACACCGCTGATTCATGGAGAATATAAGC
CGGCACATCTGCTGACAATGTCTGCAGCCAAATTCGGAGACTCGTCTGGT
GCGCGAGTCCCAGGTCCTTGGAGCCGTGTGTGGATGAATAAGTTTCGGAT
AGATCACTGCACCGGAATTCGCAACTCGAC
FMO09019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pll-RB | 1852 | CG5974-RB | 226..1373 | 9..1141 | 5260 | 98.1 | Plus |
| pll-RA | 1931 | CG5974-RA | 226..1373 | 9..1141 | 5260 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27251914..27252579 | 992..329 | 3230 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27252638..27252957 | 328..9 | 1600 | 100 | Minus |
| 3R | 32079331 | 3R | 27251788..27251852 | 1054..991 | 230 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:32 has no hits.
FMO09019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:22 Download gff for
FMO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 216..1357 | 2..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:42 Download gff for
FMO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 218..1359 | 2..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:05 Download gff for
FMO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pll-RA | 218..1359 | 2..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:05 Download gff for
FMO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27251914..27252579 | 329..992 | 99 | <- | Minus |
| 3R | 27252638..27252965 | 2..328 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:42 Download gff for
FMO09019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23077636..23078301 | 329..992 | 99 | <- | Minus |
| arm_3R | 23078360..23078687 | 2..328 | 98 | | Minus |
