FMO09031.5prime Sequence
1151 bp (1016 high quality bases) assembled on 2010-08-09
> FMO09031.5prime
CAGTCGACATGAGTCACAATGGGGCTGGTTTGGGAGCCGGATCCGGCGGA
TCGCCCATCCCGCCAACCACGGTCATGTATTCCCAATTGCAGCCATGGAG
CCAGGCGGGCGCTCCGCCCTGCATGGAGCCCGTCATGGGGCCTTCGATCC
CGCCGAGAGTTGGCGCCGCCTACGAGACGCCCACGAAGCACCCGTGGCGC
CCTGCTATGGCCTATGAGCTAATCCAGGTGAAGCATATGCCCGAGCAGCC
GGTGACCAACCAGCTGACCAAGCAGTGCTTCCTGCCCAAGGGCATGAAGA
CGGACGGCATGATATTCCCCAACTTGGTCACCGGGTTCGATCGCAATCCA
CAGCACGCCGCCCGGGCTGCCCTCTACACGCGGTACACCAGCAACGAGTG
GTACAACAACAACATGACCAAGTACTCCGAGTCGAACATGAATCGCAACC
TCTCGGAGCGCATGCGGAATGACGCAGTGCGTCTGATGCGGGAGACGGAC
GAGAAGGCCACCTCGGGCCAGAGGGACGCCGGCCGAAGGCTGGGCGAGCG
CATCACCGACCTGACCTTCTGGCGCAACGAGCTGAACGCGGAGCTGGAGA
AGCTGATCGCCGAGATGTCGGACATCAACGAGCTGCAGCGGCAGTGCGGC
AAGGCACTTCTCGACCTGGAGATACCACTGCACATCGCCCAGGAGTGCCT
CTTTCACCGAGAGTCGCGCCAGGGCACGGAGAAGGTGCATGACATCGTGG
AGAAGGCCCTCCTCGTTGAGATCAACAACTTGAGGAACTCCCGTGACCGG
CTAGGCGGCCTGCACGAGAAGATCTCGAAGCACGCTCTCGACTGCCGCGG
CGCCCAGCATCTCCTCGAGGACGATGTGTCGCACAAGGAGTCCTCGCTCG
GCATCGACTCCATGTGCCACCAGCTGAACAACCACAGCCGCGGCATCACC
TACTACGGCGGCATCGAGAAGTTCGATCCCTCGGTCAGCACCAGGAGTCC
TGGGGCGCAGGCCAGCAGCGAGCACGTCCGCCGTTCCAGGCGGAGCGCGC
GAAGCTTTCTCAGCTGCGGAGGAATGCCCAAATGTGGTCAACTCGTGGCC
CCACCGGTGACTTCTGGAGCAACACGAACACGCCTCAATCCCGCTCGCAG
A
FMO09031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-RB | 2034 | CG32820-RB | 149..1300 | 9..1150 | 5370 | 98.4 | Plus |
| CG32819-RB | 2034 | CG32819-RB | 149..1300 | 9..1150 | 5370 | 98.4 | Plus |
| CG17450-RC | 1922 | CG17450-RC | 149..1300 | 9..1150 | 5370 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21606796..21607384 | 1033..445 | 2820 | 99.3 | Minus |
| X | 23542271 | X | 21612888..21613476 | 1033..445 | 2820 | 99.3 | Minus |
| X | 23542271 | X | 21618980..21619568 | 1033..445 | 2820 | 99.3 | Minus |
| X | 23542271 | X | 21607507..21607943 | 445..9 | 2185 | 100 | Minus |
| X | 23542271 | X | 21613599..21614035 | 445..9 | 2185 | 100 | Minus |
| X | 23542271 | X | 21619691..21620127 | 445..9 | 2185 | 100 | Minus |
| X | 23542271 | X | 21606529..21606629 | 1130..1036 | 200 | 89.1 | Minus |
| X | 23542271 | X | 21612624..21612724 | 1130..1036 | 200 | 89.1 | Minus |
| X | 23542271 | X | 21618716..21618816 | 1130..1036 | 200 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:22 has no hits.
FMO09031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:17 Download gff for
FMO09031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32820-RB | 1..1152 | 9..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:37 Download gff for
FMO09031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17450-RA | 140..1300 | 1..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:00 Download gff for
FMO09031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17450-RC | 140..1300 | 1..1150 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:00 Download gff for
FMO09031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21612888..21613475 | 446..1033 | 99 | <- | Minus |
| X | 21613599..21614039 | 1..445 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:37 Download gff for
FMO09031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21483915..21484502 | 446..1033 | 99 | <- | Minus |
| arm_X | 21484626..21485066 | 1..445 | 99 | | Minus |
