FMO09036.5prime Sequence
1003 bp (997 high quality bases) assembled on 2010-08-09
> FMO09036.5prime
CAGTCGACATGATGAAGAAGTTACTAAGCAACGGCTCGAACAAAAATAAA
ACTCTTAAGTTCGACGAGGGAATCAATTTGGACCAAATAATTGCAAAGCT
AAAACTAATCGGAGAGATAGGATCCGTGGTTCAGATTTCCGTCCGGGAAA
TCGAAGCGGTTTGTTCTCGGGCCAGGGAAGTACTGCTCAAACAGCCAACT
CTGCTGGAGATTCCTGCTCCGATTAATTTACTGGGAGACATACACGGTCA
GTACCTAAATCTCTTGCGCTATTTCGAGTCCAATGGCTATCCGCCGGATT
CGGTGTATCTGCTACTGGGTGATTATGTGGACAGAGGCAAGCAGTCCATC
GAAACATTGACCCTGCTACTGGCCCTCAAGGCAAGGTATCCGACCAAGTT
CTACCTACTAAGAGGAAACCACGAGTGCTCCAGTATAAATCACTTCTACG
GATTCTACGACGAGTGCAAAAGGCGATACACGGTGAAGTTGTGGCGCACT
TTTGTAGATTGCTACAACTGCCTGCCACTGGCGGCGATCATCGAGGAGAA
TATCTTCTGTTGCCACGGCGGTCTGAGTCCCCATCTGTTTAGCATGCAGC
AGATACGGGAAATTCGCCGGCCCATCGAAATACCGGAATCCGGATTGATA
TGCGATATTCTGTGGTCCGACCCTGATCTGCGGATCATGGGCTGGGGTCC
CAACGAAAGGGGCGTGAGCCACACCTTCGGTCCAGATGTGGTCAGTGCCT
TCTTGCACCGATTCAAATTGAACCTCATTTGTCGGGGTCACCAGGTGGTC
GAGGATGGCTACGAGTTCTTCGCCAAGCGCCAGCTGATCACAATTTTCTC
GGCCCCAAACTACTGCGGGGAGTTCGATAATGCTGGGGCCATGATGTGCA
TCAATCATGATTTGTTGTGCACCTTTTCGAGTTCAGAGGCCAATACTATT
CGGAGCAGAAGGAGAACTATCAGATATAGTGTTGCAAGCTTTTCTAGACC
CAT
FMO09036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpN58A-RA | 1182 | CG3245-RA | 86..1057 | 9..983 | 4725 | 99.3 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 593..1073 | 417..897 | 475 | 73.9 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 753..1233 | 417..897 | 430 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21881509..21882448 | 949..9 | 4625 | 99.7 | Minus |
| 3R | 32079331 | 3R | 12424845..12425325 | 897..417 | 470 | 73.2 | Minus |
| 2R | 25286936 | 2R | 22041989..22042067 | 867..789 | 290 | 91.1 | Minus |
| 2L | 23513712 | 2L | 3110183..3110325 | 445..587 | 280 | 79.7 | Plus |
| 3R | 32079331 | 3R | 24519974..24520079 | 772..877 | 245 | 82.1 | Plus |
| 3R | 32079331 | 3R | 24519597..24519751 | 453..607 | 220 | 76.1 | Plus |
| 2R | 25286936 | 2R | 17955680..17955755 | 868..793 | 200 | 84.2 | Minus |
| 2R | 25286936 | 2R | 22042269..22042398 | 587..458 | 185 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:47 has no hits.
FMO09036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:20 Download gff for
FMO09036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1066 | 9..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:33 Download gff for
FMO09036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1066 | 9..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:28 Download gff for
FMO09036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpN58A-RA | 86..1066 | 9..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:28 Download gff for
FMO09036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21881468..21882448 | 9..992 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:33 Download gff for
FMO09036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17768973..17769953 | 9..992 | 98 | | Minus |
