FMO09037.5prime Sequence
1123 bp (1026 high quality bases) assembled on 2010-08-09
> FMO09037.5prime
CAGTCGACATGGACGAAGATTATTCGGCGTCATCTTCGGCCGGCGGTGGC
AAGAAGGCCGGCAAGCAGCACAACACGCTGCCCTTTTGGGGCAACGAATC
CTCGATGAACTTGAATGCCCTGATCCTGGCCAACATCCAGAGCTCCAGCT
ACTTCAAAGTCCATTTGTTTAAACTGAAAACGTACCATGAAGTGGTCGAC
GAGATCTACTACCAGGTGAAGCATATGGAGCCCTGGGAGCGTGGATCCCG
CAAAACGTCCGGACAAACGGGCATGTGCGGCGGTGTGCGAGGCGTTGGCG
CCGGCGGCATTGTGTCAACGGCATATTGCCTGCTCTACAAGCTATACACG
CTGCGGCTGACCCGGAAGCAGATCAACGGACTGCTCAATCATACAGACTC
GGCCTACATCCGGGCACTAGGCTTTATGTACTTGCGATACACGCAGCCGC
CGGGTGACCTTTACGACTGGTATGAGGACTATTTGCAGGACGAGGAGGAG
ATCGACGTGAAAGCGGGCGGCGGCCAGGTCTTAACCATCGGACAGATGGT
TTATCAGTTTATGACCAAGCTGGACTGGTTCTCCACGCTCTTTCCGCGCA
TCCCCGTGCCGATTCAAAAGCAGATCGAGAAGAGGATCGAGCAATACTGT
AGGGAGCAGGGGGTGACCGTCCATCAGTTGAGCACGGGTCGGTCAACGGC
GGGCACTGGTGGTGGTCCTGGAGCCGCTGGCCAGGATGCGGACTACCAGG
ACTATCCGGAGGGAGGAGTAGAGCGTGGAAGCGGCGGACGTGGCGGTGGA
CAAGCTGGCTCCCGTTCCAACGCCTACCCACAACCGAATAACTACCGCAA
CGATTATGACGAGCGTGACTACTATGCTGCCGCGTCTGGCTCGTCCTACG
GCCGTGGTCGCGGTGGCTATGAGGACTACCCACCGGCGCCGCTGCCACCA
CAGATGCCTTACGCGAGCGCGAAAGGAGAGGGATCGCCGATCGGGATAAG
AATAAGGATACAACCGCCACCGCAGCAGCACAAGAAGAGCACAACATAGA
CAAGCTTCCGTAGCCCCCACAGAGACCGCAGCGGGATCGCCACCGCTCCG
AGCGCCATGGAGCGCAGCGGTAA
FMO09037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1622-RA | 1682 | CG1622-RA | 141..1262 | 1..1116 | 5190 | 98 | Plus |
| CG1622-RB | 1693 | CG1622-RB | 141..1273 | 1..1116 | 5070 | 97.1 | Plus |
| CG1622-RC | 1987 | CG1622-RC | 864..1567 | 419..1116 | 3145 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13298893..13299484 | 525..1109 | 2380 | 97 | Plus |
| X | 23542271 | X | 13297305..13297447 | 17..159 | 700 | 99.3 | Plus |
| X | 23542271 | X | 13297747..13297883 | 285..421 | 685 | 100 | Plus |
| X | 23542271 | X | 13297525..13297654 | 158..287 | 650 | 100 | Plus |
| X | 23542271 | X | 13298694..13298814 | 409..529 | 560 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:22:12 has no hits.
FMO09037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:14 Download gff for
FMO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1622-RA | 124..1250 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:51 Download gff for
FMO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1622-RA | 141..1269 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:27 Download gff for
FMO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1622-RA | 141..1269 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:27 Download gff for
FMO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13297305..13297447 | 17..159 | 99 | -> | Plus |
| X | 13297527..13297651 | 160..284 | 100 | -> | Plus |
| X | 13297747..13297882 | 285..420 | 100 | -> | Plus |
| X | 13298706..13298812 | 421..527 | 100 | -> | Plus |
| X | 13298896..13299497 | 528..1123 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:51 Download gff for
FMO09037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13191338..13191480 | 17..159 | 99 | -> | Plus |
| arm_X | 13191560..13191684 | 160..284 | 100 | -> | Plus |
| arm_X | 13191780..13191915 | 285..420 | 100 | -> | Plus |
| arm_X | 13192739..13192845 | 421..527 | 100 | -> | Plus |
| arm_X | 13192929..13193530 | 528..1123 | 96 | | Plus |
