FMO09042.5prime Sequence
1116 bp (926 high quality bases) assembled on 2010-08-09
> FMO09042.5prime
CAATCGACATGTTGTTGTGCGACGGACTTGGCCCGGAGCCACCGCGGCAA
AGGCATCGAAATCGAACCAGTGCCGCCAGGATTAGAAAAAGACCGAAATG
CTGCTGCGGCGATGGCGGCAGCGGCAATCATGCGGAGCACCCCGGCGGGA
TAGTTAGCAACCCAATTAGTTATGGCCAAAGTCTGACAACATTGGCGCGG
GTCACGGCGGCCGCACTGACCACGGCGGCCATGCTGCACACAACGAATGC
CCTGGCTGCCACCGGCTCATCCAGCGCATCCAACTCTTCCACCGGCGGAA
TAGCACTGCCGCTGGGCACTGCCACACCTGCCACACACGAACTGAATGCC
ACACAGCCGTTTGGCGGCTCGGGTCTGAACTTCAACGAAAGCGGCGCAAG
ATTAAGTGACCATCATCATCATCAACAACACAATCCCGACGAGGATTGGC
TGGACAACATCGTTTGGGTGTTCAAGGCCTTTGTCATGCTGCTCATCATC
ATTGCGGCCATCTGCGGCAATCTGCTTGTTATTATTTCTGTGATGCGTGT
TAGAAAATTAAGAGTTATAACGAATTACTTTGTAGTTTCCTTAGCCATGG
CTGATATAATGGTCGCTATTATGGCCATGACATTTAACTTTAGTGTGCAA
GTAACTGGGCGGTGGAACTTCAGCCCCTTCCTGTGCGATTTGTGGAACAG
CCTCAATGTCTACTTCTCAACAGCGAGTATTTTTGCATTTATGCTGCATA
TCTGTGGATAGATACTATGCTATTGTTAAGCCCCTCAAGTATCCGATTAG
CATGACGAAACGCGTGGTCGGCATTATGCTGCTAAACACATGGATATCGC
CGGCACTGCTCTCCTTCTTGCCCATCTTCATCGGCTGGTACACCACGCCG
CATCACCAGCAGTTCGTCATCCAGAATCCGACGCAGTGCTCGTTCGCTGA
TGACAAGTACTACGCCCTCCTTCTCCAGCTCCATATCGTTCTGGAAACCC
TGGGACAATATGATATTCACCTACCTGGTCATCTTTCAGGGAGACAATCC
GGCAGAGAAGCAGCTGATAGATGCTGCACGGCAATGGCATGCTGATGCCC
GACCTTCTTTGCAGCC
FMO09042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Octbeta2R-RG | 6672 | CG33976-RG | 2760..3866 | 8..1116 | 5000 | 97.1 | Plus |
| Octbeta2R-RE | 6593 | CG33976-RE | 2681..3787 | 8..1116 | 5000 | 97.1 | Plus |
| Octbeta2R-RD | 3063 | CG33976-RD | 1015..2121 | 8..1116 | 5000 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12560401..12560955 | 562..8 | 2730 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12554268..12554604 | 1098..760 | 1220 | 92 | Minus |
| 3R | 32079331 | 3R | 12556975..12557077 | 663..561 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 12554676..12554775 | 761..661 | 440 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:07 has no hits.
FMO09042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:11 Download gff for
FMO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RA | 1..1106 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:33 Download gff for
FMO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RC | 1181..2287 | 8..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:58 Download gff for
FMO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Octbeta2R-RD | 1015..2121 | 8..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:58 Download gff for
FMO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12554249..12554602 | 762..1116 | 92 | <- | Minus |
| 3R | 12554676..12554774 | 662..761 | 98 | <- | Minus |
| 3R | 12556977..12557075 | 563..661 | 100 | <- | Minus |
| 3R | 12560401..12560955 | 8..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:33 Download gff for
FMO09042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8379971..8380324 | 762..1116 | 92 | <- | Minus |
| arm_3R | 8380398..8380496 | 662..761 | 98 | <- | Minus |
| arm_3R | 8382699..8382797 | 563..661 | 100 | <- | Minus |
| arm_3R | 8386123..8386677 | 8..562 | 99 | | Minus |
