FMO09045.5prime Sequence
1121 bp (1021 high quality bases) assembled on 2010-08-09
> FMO09045.5prime
CAGTCGACATGCCGTACAACATGGACGTACTGATACCGGAAAAGGACGAG
CTCTCCGACTTGAAGCTAAAAGATGCGCACAGTTCCCTGGACGAACTGGA
CATGGAGGATCTCTACGTGCGTTACAAGAAACTGCAAAAGACACTGGAGT
TCATTGAAGTGCAGGAGGAGTACATCAAGGACGAGCAGCGAAACCTGAAA
AAGGAGTATCTGCACGCCCAGGAGGAGGTGAAGCGCATCCAGTCGGTGCC
GCTGGTGATTGGCCAGTTCCTGGAGGCCGTCGATCAGAACACGGGCATTG
TGGGCTCCACCACCGGCTCCAATTACTATGTGCGCATCCTGTCCACCATC
GATCGCGAGCTGCTGAAGCCCTCCGCCTCGGTGGCCCTGCACAAGCACAG
CAACGCGCTGGTGGACGTGCTGCCACCAGAGGCGGATAGCTCCATTTCGA
TGCTGCAGCCGGATGAGAAGCCCGACGTTAGCTATGCGGACATTGGTGGC
ATGGACATGCAGAAGCAGGAGATCCGCGAGGCAGTCGAACTGCCGCTGAC
CCACTTCGAGCTGTACAAGCAGATTGGCATCGATCCGCCGCGCGGCGTGC
TTATGTACGGTCCGCCCGGTTGCGGCAAGACCATGTTGGCCAAGGCGGTG
GCCCATCATACGACGGCGTCGTTCATACGCGTCGTCGGCTCGGAGTTCGT
GCAGAAGTACCTCGGCGAGGGACCGCGCATGGTGCGCGACGTTTTCAGGC
TGGCCAAGGAGAACGCGCCGGCCATCATCTTCATTGACGAGATCGATGCG
ATTGCCACGAAGCGTTTCGATGCGCAGACTGGCGCCGATCGCGAGGTGCA
GCGCATTCTGCTCGAGCTGCTCAACCAGATGGACGGGTTCGATCAGACCA
CGAACGTTAAGGTGATCATGGCTACCAACAGGCGGACACACTCGATCCGG
CATTGCTGCGACTTGGTCGATGGATCGTAGATGAGTTCCCGCTGCCCGAT
CGCCGCCGAAGCGACTCGTCTTCTCCACATCACTCGAGATGACCTAAGCG
AAGGATGTCGATTGGAGAGTTGTGGGGCGGCCGGACAAGATCTCGTGTGC
GAATCTCGCAATTGCAGAGGC
FMO09045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3-RB | 1553 | CG16916-RB | 213..1309 | 9..1094 | 5120 | 98.5 | Plus |
| Rpt3-RA | 1423 | CG16916-RA | 83..1179 | 9..1094 | 5120 | 98.5 | Plus |
| Rpt3R-RD | 1414 | CG9475-RD | 145..1035 | 144..1029 | 1655 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11125563..11126469 | 127..1028 | 4260 | 99 | Plus |
| 3R | 32079331 | 3R | 9755220..9755572 | 928..576 | 835 | 82.4 | Minus |
| 3R | 32079331 | 3R | 9755619..9756052 | 577..144 | 820 | 79.3 | Minus |
| X | 23542271 | X | 11125421..11125506 | 43..128 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 23753922..23754049 | 751..878 | 235 | 78.9 | Plus |
| X | 23542271 | X | 21317013..21317269 | 672..928 | 205 | 72 | Plus |
| X | 23542271 | X | 6290177..6290236 | 893..834 | 195 | 88.3 | Minus |
| X | 23542271 | X | 11125313..11125349 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:47:46 has no hits.
FMO09045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:09 Download gff for
FMO09045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 124..1235 | 6..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:11 Download gff for
FMO09045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 81..1192 | 6..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:39 Download gff for
FMO09045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3-RA | 81..1192 | 6..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:39 Download gff for
FMO09045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11125311..11125348 | 6..44 | 97 | -> | Plus |
| X | 11125423..11125506 | 45..128 | 100 | -> | Plus |
| X | 11125565..11126554 | 129..1105 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:11 Download gff for
FMO09045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11019344..11019381 | 6..44 | 97 | -> | Plus |
| arm_X | 11019456..11019539 | 45..128 | 100 | -> | Plus |
| arm_X | 11019598..11020587 | 129..1105 | 97 | | Plus |
