FMO09046.5prime Sequence
1136 bp (1035 high quality bases) assembled on 2010-08-09
> FMO09046.5prime
CAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACTTTGGCGGA
TATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGCGTCTTCAT
CAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGTGGAGATGG
CAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGCGCGTCTCT
CATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACTGGCTCCAT
TCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCACGCCAGACA
TTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTATTTTTAGT
TGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGACAAGCAAAA
TGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATCCTCCGGAT
CAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCGCTGGTTCT
GTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGTGTGCAGTT
AAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGACCAGATCG
ACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATGTCTACACC
CGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGTGTCCAAGT
TTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAACACCCAGC
AGGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAACTCCCACT
ACCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTACAGTTCACA
GAGCTGGCCATCATCCGGAGCCTATGAAAATCATGCTGCCTATGGTGGAT
CGGTTGCATCCATGTCCCCCCGCCAGCAGCACCTCGGGTACCAGCTCTGC
CGCCCACAGTCCCGTACAGACGCAAGCGCAGCAGCCAGGGAACTGGGAGC
CGAGTTTATGACCTCCACTTACGGCGTGGGGATCGAGCATGCTACTTAAC
CATCGGCTGCCTATTCAATGCCGCGGACTTCTTGCTTATTCGCGGGAGCG
CTGGAGATTCAAGTTGCATCTGCGCGCTTCGGCTCT
FMO09046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gsb-RA | 1649 | CG3388-RA | 185..1307 | 9..1132 | 5205 | 98.1 | Plus |
| gsb-n-RA | 2237 | CG2692-RA | 369..589 | 51..271 | 460 | 81.6 | Plus |
| prd-RB | 2459 | CG6716-RB | 401..633 | 87..319 | 415 | 78.5 | Plus |
| gsb-n-RA | 2237 | CG2692-RA | 876..1042 | 570..736 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25063228..25064246 | 58..1079 | 4805 | 99.1 | Plus |
| 2L | 23513712 | 2L | 12084821..12085053 | 319..87 | 415 | 78.5 | Minus |
| 2R | 25286936 | 2R | 25051416..25051625 | 271..62 | 405 | 79.5 | Minus |
| 2R | 25286936 | 2R | 25062148..25062203 | 9..64 | 280 | 100 | Plus |
| 2R | 25286936 | 2R | 25041692..25041858 | 736..570 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:56 has no hits.
FMO09046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:15 Download gff for
FMO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-RA | 162..1242 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:18 Download gff for
FMO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-RA | 178..1258 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:46 Download gff for
FMO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-RA | 178..1258 | 1..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:46 Download gff for
FMO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25062141..25062202 | 1..63 | 93 | -> | Plus |
| 2R | 25063234..25064252 | 64..1086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:18 Download gff for
FMO09046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20949664..20949725 | 1..63 | 93 | -> | Plus |
| arm_2R | 20950757..20951775 | 64..1086 | 99 | | Plus |
