FMO09050.5prime Sequence
650 bp (650 high quality bases) assembled on 2010-08-09
> FMO09050.5prime
CAGTCGACATGGAGGACCATAATACAGCCAACCTGTCGGAGCCAGCATCT
CCAGCTAATTCTGTGGCATCCGCAGAAATTGCCGCCGAGTTCGCTGCGCT
TTCCGTCGAGGAGAAGGAGCAGCGTCGGGCTGAGTGGAGTCAGGAGCTCG
CCCGCGTTGAGGAAGAGATCAATACGCTGCGAACTGTCCTAGCCTCCAAG
ACGCGCCATGCCTCCGATCTCAAGCGCAAGCTGGGCATCACCGTCTGGAA
GGAGGTGACGGACGACGTGAACCAGGGCCTTAAGAACCTCAAGGAGAGCA
CTGTTTACCAATCGGTGGAGCAGAGCGTGGGCACGTTTACTAAAACGGTG
TACGAGGCACCACTATACCAACGCACTGAGTCGGTGCTAAAGTCCACGGG
CGAGAAGACCGCCTCGGTGTTTGGCAGCATCACCAGTGGCATTTCGTCGA
AACTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCG
GTGGGCTCTGCCTACGAGAACGTTAAAACCAAGGTGACATCCCGCTCGGG
TTCGGTGTCCAGTTTCCCAGATGCCCTGGACGAGAATAACACATCCTCGG
GTCTGAATTCACCCACAGACTCACTCCCGAAAGCAAGCTTTCTAGACCAT
FMO09050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5174-RA | 1532 | CG5174-RA | 132..755 | 9..632 | 3120 | 100 | Plus |
| CG5174-RL | 981 | CG5174-RL | 132..758 | 9..632 | 3080 | 99.5 | Plus |
| CG5174-RB | 2195 | CG5174-RB | 805..1418 | 19..632 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18424323..18424486 | 141..304 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18424872..18425034 | 365..527 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 18424127..18424252 | 19..144 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 18425340..18425444 | 528..632 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 18424607..18424666 | 305..364 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:21 has no hits.
FMO09050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:06 Download gff for
FMO09050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 128..766 | 1..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:29 Download gff for
FMO09050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 125..763 | 1..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:50 Download gff for
FMO09050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5174-RA | 125..763 | 1..642 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:50 Download gff for
FMO09050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18424127..18424251 | 19..143 | 100 | -> | Plus |
| 2R | 18424326..18424486 | 144..304 | 100 | -> | Plus |
| 2R | 18424607..18424666 | 305..364 | 100 | -> | Plus |
| 2R | 18424872..18425034 | 365..527 | 100 | -> | Plus |
| 2R | 18425340..18425452 | 528..642 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:29 Download gff for
FMO09050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14311632..14311756 | 19..143 | 100 | -> | Plus |
| arm_2R | 14311831..14311991 | 144..304 | 100 | -> | Plus |
| arm_2R | 14312112..14312171 | 305..364 | 100 | -> | Plus |
| arm_2R | 14312377..14312539 | 365..527 | 100 | -> | Plus |
| arm_2R | 14312845..14312957 | 528..642 | 96 | | Plus |
