FMO09062.5prime Sequence
1151 bp (1010 high quality bases) assembled on 2010-08-09
> FMO09062.5prime
CAGTCGACATGCTTCGTTATACGGCACGGATTTTGAATGGGATTTACCCA
CTTATGCCAAGGCAAGTATTAAAACGTTCCGCACACCAGGTGCCCGAGAA
GCTGAAAAAAGTTGAGACGGACAAGGACCCGGAATTCTCGGAAATGGTTC
TTTATTATTATCACAAGGCCGCGCAGACTATGGAGCCTGCATTGCTCAAG
GAAATGGAAAAGTATCCGCATATGAAGCCGGAGGAGCGTCAGGCTCGTGT
CACCGCTATACTGAATCTGCTTGGGAGCGTCTCCACCTCGGTGGAGGTTA
ATTTTCCCATTGTCCGCAAAAACGGCACCTACGAGATCATCAGCGGTTAT
CGTTCGCATCATGTACGCCATCGATTGCCTCTCAAGGGCGGAATCCGATA
CGCTCTGGACGTGAACGAGAGCGAAGTTAAAGCCCTTGCCGCCATTATGA
CGTTCAAGTGCGCTTGCGTGAATGTACCTTATGGTGGATCTAAGGGCGGC
ATTTGTATCGATCCCAAGAAGTATACAGTGGATGAGCTGCAGACGATCAC
ACGGCGATACACGATGGAGTTGCTCAAGCGTAATATGATTGGTCCCGGCA
TCGATGTACCGGCGCCCGATGTGAACACTGGTCCGCGTGAGATGAGCTGG
ATTGTTGATCAGTACCAGAAGACATTTGGCTACAAGGATATCAATTCATC
GGCTATTGTCACCGGGAAGCCCGTACACAACGGCGGCATTAATGGTCGAC
ATTCGGCCACGGGCAGAGGCGTTTGGAAGGCGGGCGATCTCTTTCTGAAG
ATAAGGAATGGATGGATCTGCTCAAGTGGAAGACGGGATGGAAGGACAAG
ACGGTCATAGTGCAGGATTTGGCAATGTGGGCTCCTTTGCCGCTAGTATG
TGCACGAGGCGGGCGCCAAAGTCATCGGAATAAAAGAGTTTGATGTTTCT
CTTGTTATTAGGACGGCATAAATATAATGATCTTTTGAATACACTGGAGG
AAAAGAAGACCATTAAAGATATCCAAAGCCTCAGGAGTCTAAGAGGATTT
GTTGGTAGCCGAACCGATATCCTTATGCCGGTGCCACCCAAAAGTGAACC
ACGACAATGCAAGACATCAGTCAAGCTGAATCTGGAGGCCACGTCGACAC
A
FMO09062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4434-RA | 1795 | CG4434-RA | 92..1236 | 9..1136 | 5135 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23289071..23289660 | 975..390 | 2705 | 98.8 | Minus |
3R | 32079331 | 3R | 23289716..23290098 | 391..9 | 1915 | 100 | Minus |
3R | 32079331 | 3R | 23288888..23289001 | 1093..983 | 265 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:38:00 has no hits.
FMO09062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:04 Download gff for
FMO09062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4434-RA | 87..1206 | 4..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:36 Download gff for
FMO09062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4434-RA | 87..1206 | 4..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:20 Download gff for
FMO09062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4434-RA | 87..1206 | 4..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:20 Download gff for
FMO09062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23289067..23289659 | 391..978 | 98 | <- | Minus |
3R | 23289717..23290103 | 4..390 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:36 Download gff for
FMO09062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19114789..19115381 | 391..978 | 98 | <- | Minus |
arm_3R | 19115439..19115825 | 4..390 | 99 | | Minus |