Clone FMO09062 Report

Search the DGRC for FMO09062

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:90
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4434-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09062.5prime Sequence

1151 bp (1010 high quality bases) assembled on 2010-08-09

> FMO09062.5prime
CAGTCGACATGCTTCGTTATACGGCACGGATTTTGAATGGGATTTACCCA
CTTATGCCAAGGCAAGTATTAAAACGTTCCGCACACCAGGTGCCCGAGAA
GCTGAAAAAAGTTGAGACGGACAAGGACCCGGAATTCTCGGAAATGGTTC
TTTATTATTATCACAAGGCCGCGCAGACTATGGAGCCTGCATTGCTCAAG
GAAATGGAAAAGTATCCGCATATGAAGCCGGAGGAGCGTCAGGCTCGTGT
CACCGCTATACTGAATCTGCTTGGGAGCGTCTCCACCTCGGTGGAGGTTA
ATTTTCCCATTGTCCGCAAAAACGGCACCTACGAGATCATCAGCGGTTAT
CGTTCGCATCATGTACGCCATCGATTGCCTCTCAAGGGCGGAATCCGATA
CGCTCTGGACGTGAACGAGAGCGAAGTTAAAGCCCTTGCCGCCATTATGA
CGTTCAAGTGCGCTTGCGTGAATGTACCTTATGGTGGATCTAAGGGCGGC
ATTTGTATCGATCCCAAGAAGTATACAGTGGATGAGCTGCAGACGATCAC
ACGGCGATACACGATGGAGTTGCTCAAGCGTAATATGATTGGTCCCGGCA
TCGATGTACCGGCGCCCGATGTGAACACTGGTCCGCGTGAGATGAGCTGG
ATTGTTGATCAGTACCAGAAGACATTTGGCTACAAGGATATCAATTCATC
GGCTATTGTCACCGGGAAGCCCGTACACAACGGCGGCATTAATGGTCGAC
ATTCGGCCACGGGCAGAGGCGTTTGGAAGGCGGGCGATCTCTTTCTGAAG
ATAAGGAATGGATGGATCTGCTCAAGTGGAAGACGGGATGGAAGGACAAG
ACGGTCATAGTGCAGGATTTGGCAATGTGGGCTCCTTTGCCGCTAGTATG
TGCACGAGGCGGGCGCCAAAGTCATCGGAATAAAAGAGTTTGATGTTTCT
CTTGTTATTAGGACGGCATAAATATAATGATCTTTTGAATACACTGGAGG
AAAAGAAGACCATTAAAGATATCCAAAGCCTCAGGAGTCTAAGAGGATTT
GTTGGTAGCCGAACCGATATCCTTATGCCGGTGCCACCCAAAAGTGAACC
ACGACAATGCAAGACATCAGTCAAGCTGAATCTGGAGGCCACGTCGACAC
A

FMO09062.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4434-RA 1795 CG4434-RA 92..1236 9..1136 5135 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23289071..23289660 975..390 2705 98.8 Minus
3R 32079331 3R 23289716..23290098 391..9 1915 100 Minus
3R 32079331 3R 23288888..23289001 1093..983 265 92.2 Minus
Blast to na_te.dros performed on 2014-11-28 23:38:00 has no hits.

FMO09062.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:04 Download gff for FMO09062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4434-RA 87..1206 4..1110 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:36 Download gff for FMO09062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4434-RA 87..1206 4..1110 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:20 Download gff for FMO09062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4434-RA 87..1206 4..1110 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:20 Download gff for FMO09062.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23289067..23289659 391..978 98 <- Minus
3R 23289717..23290103 4..390 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:36 Download gff for FMO09062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19114789..19115381 391..978 98 <- Minus
arm_3R 19115439..19115825 4..390 99   Minus