FMO09063.5prime Sequence
1139 bp (1012 high quality bases) assembled on 2010-08-09
> FMO09063.5prime
CAGTCGACATGGTCACGAACATGTCGCAGCCGCATTATTGCGGCACCGGC
ATCGATGATTTCCACACAAACTACAAATACTTTCACGGTTACTTCTCGCT
GATTGTCTGTATCCTGGGAACCATTGCGAATACCCTAAATATCATAGTGC
TGACCCGACGGGAGATGCGCTCCCCCACAAATGCCATACTCACGGGTCTG
GCTGTCGCCGATCTGGCTGTGATGCTGGAATACATACCCTATACGGTGCA
CGACTATATCCTCAGTGTAAGGCTGCCGCGAGAGGAGCAGCTCAGCTACA
GCTGGGCGTGCTTCATCAAGTTTCACTCGGTATTTCCCCAGGTGCTGCAC
ACCATCTCCATTTGGCTAACGGTGACGCTGGCAGTTTGGCGGTACATAGC
GGTAAGCTATCCGCAAAGGAATCGCATCTGGTGTGGAATGCGAACTACTC
TGATCACCATAGCCACGGCCTATGTTGTCTGTGTCCTGGTAGTGTCACCT
TGGCTGTACCTAGTCACAGCCATTGCCAAGTTCCTAGAGACTTTGGATGC
CAATGGCAAGACGATTGCCTCAGTGCCATTGAGTCAATACATTCTGGACT
ACAATCGGCAGGATGAGGTGACCATGCAGGTCATGTCGAGTACAACGCCA
GATGTTTCCTGGGCGATACCAAGTGATTCGGCCAATGGAACTGCAGTTAG
CTTGCTAAGTCTAACCACAGTGATACCCCTAACCACATTAAGCACTGGAG
TAACCACATCCTCGTCGTTGGGTGAGCGCAATGTGACTGTCTATAAGCTG
TATCACAGCGCACTGGCGCTGCGTGATCGGCAGTTCAGGAATGCGACCTT
CCTTATATACAGTGTCCTGATCAAGCTGATACCCTGCTTCGCACTGACCA
TTCTGTCTGTGCGGCTCATCGGTGCTCTGTTGGAGGCCAAACGAAGAGGA
AGATCTTGGCCTGTCATGCAGCCAACGATATGCAGCCAATTGTCAATGGA
AGGTGGTGATTCCGACGCAACCCAAAAGCTGTTAACTGCTGGGAGAAGGA
GAAGCAAACGATCGCACACGAGGATGCTTCTGTGGTACTGCCTGCTCTTT
CTGGTCACGAGTTCCACAGGCATATAAGGTCTGCTGAGT
FMO09063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MsR2-RC | 2918 | CG43745-RC | 553..1688 | 8..1137 | 5260 | 98.2 | Plus |
| MsR2-RB | 2918 | CG43745-RB | 553..1688 | 8..1137 | 5260 | 98.2 | Plus |
| MsR2-RA | 2592 | CG43745-RA | 227..1362 | 8..1137 | 5260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2298153..2299193 | 71..1108 | 4745 | 98.6 | Plus |
| 3L | 28110227 | 3L | 2342673..2343073 | 96..496 | 1000 | 83.3 | Plus |
| 3L | 28110227 | 3L | 2297661..2297723 | 8..70 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:41 has no hits.
FMO09063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:03 Download gff for
FMO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13802-RA | 224..1353 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:45 Download gff for
FMO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR2-RA | 224..1353 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:15 Download gff for
FMO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MsR2-RA | 224..1353 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:15 Download gff for
FMO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2297658..2297723 | 1..70 | 94 | -> | Plus |
| 3L | 2298153..2299216 | 71..1128 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:45 Download gff for
FMO09063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2297658..2297723 | 1..70 | 94 | -> | Plus |
| arm_3L | 2298153..2299216 | 71..1128 | 98 | -> | Plus |
