FMO09074.5prime Sequence
1008 bp (720 high quality bases) assembled on 2010-08-09
> FMO09074.5prime
CAGTCGACATGCATCTGAACCATGCGACAGCCGCCACGGCAGCCATGGCC
AACTATCAGCACTACCAACTGCCAGCCTCCCATGGCGGTGGCGGCGGAGG
AGGAGGTGGCGGTGGCGGTGGAGGAGGGAGTAATGGTGGATCTGGACCGG
GTCCCAACTCGGGACAGCAGCAGCCCACCACACTGGCCAGCCTGCAACAG
AGTCCCTTTGCGCTGCATCAACTCACCGCCGTGCAGGCCATCCAGCACCC
TACCCACCAAGCCATGCTCCATCCACAGCACCCGCTGGTCCATTTGCTGG
ACATATCCACTACAACAGCGAACAGTGGCGGAGGAGGCGGGGGCAGCCAC
ACGCCCATTTCTCCTATGAAACAGGAGGTGCAGAGCGTGATTAGCGAGGA
GGAGGTGGTGGTGGACGATCCGCGCAAGAAGAAACAGTGCCTCGTGTGCA
AGAACAAGTTCCTGCAGCTGACCACGTTACGCAACCACATGAAGATCCAC
ACGGACGAGCGGCCCTACAAGTGCAAACACTGCGACAAGGCCTTCCGCCA
GATCTCGACGCTAACCAACCACGTGAAAATCCACACCGGAGAAAAGCCGT
TCACCTGCAACATCTGCGCCAAGGACTTTCGCCAGCAGAGCACCTTGATC
AATCACATCAAGACGCACAAGGCGGCGGATCCAGCACGCCAACTTCCCTG
TTGAACTATCAGCCGCAGACGGGCAGAGGCAAACACCGAAAGTCCCAGAT
GCAACAGGCCTACCAGCATCAGCATCAGCGCGTCCAATCTCAAAGACCTT
GTATTCCGGCAGCTACAGCTCGCCGGCGGCCGATGAGCTGGTGAAGCCGT
TCCAGTGTAGCGTTGAAGCGCGCTTCCCTCAGTTGACACGCTGCACAACA
CGAGCGGTGCCACTTCGATCCCTAGCCGTACCAAGTGCGAAACGTGTGGA
CAAGTCTTTTAGCCTGCTGGCGAACCCTGGGCAACATCAAAAGATCCTAA
CGGCGGAC
FMO09074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4360-RB | 3569 | CG4360-RB | 467..1461 | 8..997 | 4430 | 97 | Plus |
| CG4360-RA | 3493 | CG4360-RA | 467..1461 | 8..997 | 4430 | 97 | Plus |
| CG4360-RB | 3569 | CG4360-RB | 1391..1548 | 512..669 | 220 | 76.7 | Plus |
| CG4360-RA | 3493 | CG4360-RA | 1391..1548 | 512..669 | 220 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20326873..20327537 | 672..8 | 3295 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20326493..20326790 | 973..680 | 925 | 92.7 | Minus |
| 3R | 32079331 | 3R | 20326382..20326539 | 669..512 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:59:55 has no hits.
FMO09074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:35:59 Download gff for
FMO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RB | 446..1432 | 8..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:32 Download gff for
FMO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RA | 474..1460 | 8..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:25 Download gff for
FMO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4360-RA | 467..1453 | 8..990 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:25 Download gff for
FMO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20326477..20326798 | 673..990 | 91 | <- | Minus |
| 3R | 20326873..20327537 | 8..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:32 Download gff for
FMO09074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16152199..16152520 | 673..990 | 91 | <- | Minus |
| arm_3R | 16152595..16153259 | 8..672 | 99 | | Minus |
