FMO09077.5prime Sequence
1138 bp (1031 high quality bases) assembled on 2010-08-09
> FMO09077.5prime
CAGTCGACATGGACAAGGTGAACGAACTCAAGGAAAAGGGTAACCAGGCG
CTCAGTGCCGAGAAGTTCGACGAGGCGGTGGCGGCGTACACAGAGGCCAT
CGCTCTGGACGACCAGAACCATGTGCTCTACAGCAACCGTTCGGCGGCAT
TCGCCAAGGCTGGAAAGTTCCAGGAGGCGCTAGAAGATGCGGAGAAGACC
ATTCAGCTTAATCCCACCTGGCCTAAGGGTTACTCACGCAAAGGAGCTGC
CGCTGCGGGTCTGAATGACTTTATGAAGGCCTTCGAAGCGTACAACGAGG
GTCTCAAGTACGATCCCACGAATGCTATACTCCTGCAAGGCCGCATGGAA
ACTACTGCCTCGGCTCTGAGCTTTATGCAATCGCAGGGGGATATACCCAT
GGACGTTGATCCCCAGCAGGCACGCAGCCGCAGGGCTCCATCGCCACCGC
CGGCGAAACCGGCTGAGCCCCCAAAGCCCGCTGAACCTCGGGTAGAGGAC
ATGACTGAGGAGCAGAAGAATAAGTACTTCGCGAGGAAGGAGAAGGAACT
GGGCAACGCCGCCTACAAGAAAAAGGACTTTGAAACGGCCCTAAAACACT
ACCACGCTGCCATTGAACACGATCCCACGGATATCACGTTCTATAACAAC
ATAGCTGCTGTTCACTTTGAGCGCAAGGAGTACGAGGAGTGCATCAAGCA
GTGCGAGAAGGGCATTGAGGTGGGGCGCGAAAGCCGCGCCGACTTTAAGC
TGATAGCTAAGTCCTTTGCTCGCATCGGTAACACCTATCGTAAGCTAGAG
AACTACAAGCAGGCGAAGGTTTACTATGAGAAGGCCATGTCCGAGCATCG
CACCCCTGAGATCAAGACCTCGCTGAGCGAGGTGGAAGCCAAAATCAAGG
AGGAGGAGCGAATGGCCTACATCAATCCCGGAGAAGCCGAGAAGAGAAGA
GCAGGCATCCTTTTCTTTAGAAGGGGACTACAGCACCGCTGTAAAGCACT
ACACGAGGCATCAAGCGCAATCCGGATGATCCAACTCTATAGTAACCGCG
CGCCTGCTAACCAAGCTGCGCCTTTGATCTGGGCCTCAGACTGCGACCTG
CCTCAGCTAACGAAAGTCTAAGGCTCACTCGCAAGCCA
FMO09077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hop-RA | 2023 | CG2720-RA | 151..1254 | 9..1097 | 5115 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 295703..296504 | 300..1088 | 3345 | 97.4 | Plus |
| 2L | 23513712 | 2L | 295344..295630 | 16..302 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:53:12 has no hits.
FMO09077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:35:57 Download gff for
FMO09077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 156..1277 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:34 Download gff for
FMO09077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 143..1264 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:48 Download gff for
FMO09077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 143..1264 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:48 Download gff for
FMO09077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 295344..295628 | 16..300 | 100 | -> | Plus |
| 2L | 295704..296525 | 301..1105 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:34 Download gff for
FMO09077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 295344..295628 | 16..300 | 100 | -> | Plus |
| arm_2L | 295704..296525 | 301..1105 | 97 | | Plus |
