FMO09079.5prime Sequence
881 bp (881 high quality bases) assembled on 2010-08-09
> FMO09079.5prime
CAGTCGACATGAACATGAAGCCCGACATCCTAGCGCTCTGCATCCTGGCT
ACCACGATCCTGTGCAGCAGGACGCGTCACGTCGCCGGCTTCCTGACTGC
ACAGTCCACCGCCAGCGGAGGAGCAGGCGGAGCAAACGGTGCCAAAGTGG
GTGACCATCAGGGCGTGGCGTCCGTACCACAACGTCTTCATTTGCCCGTT
CTAGCGGTCGGGGGCGGACCCGTTCGCCAAGGACCCGCTCTGCCCGGCGA
TGTCCTGGATGCCCAGGAACGAGCTGTTTACGATCCCGGCGATGAATTAC
TCCGCGCCCAGGAGCTCGGATTGGCAGTGGTTCCTCAAGGTCCCGACTAC
GCGGATGCGGTGTACAACGAACTCGAGCTGGCCAGCAAGTTCGAGGTGCT
CAAGAAGATGGAGGAGGATTTGCGTGCCGAGCAGGAGCTGGTGGACAAAT
CCGCTTTGCTCATGAAAATGCTGGAGGATCCCTCATTGGAAACCTTGCCC
TTGGTCTACGTGGAGGAGGAGGAGCCGGAGGCTGTGATTCCTTCCGGCGG
AGCCGAGGACTACGCCGACTTGGAGAACGCCGTTCAGGATTTGGTTTTGG
GCCAGAGCAAATCCAAGCGTTCGCGCTACTATCGAAGGTATCCATGGAAG
CGTCACAACAAGAATCGCGGTTCTTACATGAATTCTATCAACAGCAACTA
TGAACCGGAATTGCGTTATGCCTGCACACCTAGTAAGGAGGATATATTCA
AGCTGCTGGTCAATCTGCACGAGAATCGCAAGGGCAATCACAGCAAGACG
GTTAACTTCTGCAATCGAAAGCGTCCGGCCAAGGCGGTCTTCACCAACAT
TAGGTTCCTGGGCGCAAGCTTTCTAGACCAT
FMO09079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7191-RA | 1643 | CG7191-RA | 149..1003 | 9..863 | 4275 | 100 | Plus |
| CG7191-RB | 1619 | CG7191-RB | 149..979 | 9..863 | 3905 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7771320..7771605 | 9..294 | 1430 | 100 | Plus |
| 2L | 23513712 | 2L | 7773463..7773658 | 475..670 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 7774200..7774393 | 670..863 | 970 | 100 | Plus |
| 2L | 23513712 | 2L | 7773068..7773251 | 294..477 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:17 has no hits.
FMO09079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:35:56 Download gff for
FMO09079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 128..986 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:54 Download gff for
FMO09079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 149..1007 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:47 Download gff for
FMO09079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7191-RA | 149..1007 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:47 Download gff for
FMO09079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7773465..7773658 | 477..670 | 100 | -> | Plus |
| 2L | 7774201..7774397 | 671..868 | 98 | | Plus |
| 2L | 7771320..7771605 | 9..294 | 100 | -> | Plus |
| 2L | 7773069..7773250 | 295..476 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:54 Download gff for
FMO09079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7771320..7771605 | 9..294 | 100 | -> | Plus |
| arm_2L | 7773069..7773250 | 295..476 | 100 | -> | Plus |
| arm_2L | 7773465..7773658 | 477..670 | 100 | -> | Plus |
| arm_2L | 7774201..7774397 | 671..868 | 98 | | Plus |
