FMO09084.5prime Sequence
1063 bp (1029 high quality bases) assembled on 2010-08-09
> FMO09084.5prime
CAGTCGACATGCGACTGCCATATCGAAATAAGAAGGTCACCCTGTGGGTG
CTCTTCGGCATCATCGTCATCACCATGTTCCTATTCAAATTCACCGAACT
GCGGCCCACATGCCTCTTCAAGGTGGACGCCGCCAACGAGCTCTCCTCCC
AAATGGTTCGCGTTGAGAAATACCTCACAGATGACAATCAACGCGTTTAT
TCATACAACCGTGAGATGCCATTAATATTCATAGGCGGCGTGCCGAGATC
TGGGACGACTTTGATGCGCGCCATGCTGGATGCCCATCCCGATGTGCGCT
GCGGGCAGGAAACCCGTGTCATTCCGCGCATCCTGCAGCTGCGCTCGCAC
TGGCTGAAGTCCGAGAAGGAGTCGCTCCGCCTGCAGGAGGCCGGCATCAC
CAAAGAGGTCATGAACAGTGCCATCGCGCAGTTCTGTCTGGAAATCATCG
CCAAACACGGCGAGCCGGCGCCGCGCTTATGCAACAAGGATCCGCTGACG
CTGAAAATGGGCTCCTATGTCATCGAGCTATTTCCGAACGCTAAATTCCT
ATTCATGGTGCGCGACGGCCGGGCGACAGTTCATTCGATTATATCGCGCA
AGGTGACAATCACCGGCTTCGATTTGAGCAGCTACCGGCAGTGCATGCAG
AAGTGGAACCACGCCATCGAGGTGATGCACGAGCAGTGCCGGGACATCGG
CAAGGACCGCTGCATGATGGTTTACTATGAGCAGCTGGTACTGCATCCCG
AGGAGTGGATGCGAAAGATACTGAAATTCCTGGACGTGCCATGGAACGAT
GCGGTGCTGCACCACGAGGAGTTCATAAATAAACCGAACGGTGTGCCTCT
GTCCAAGGTGGAACGTTCGTCGGACCAGGTTATCAAGCCGGTTAATCTGG
AGGCGATGTCCAAATGGGTTGGCCAAATACCCGGCGACGTGTGCGCGACA
TGGCCGACATAGCGCCCATGCTGTCCGTGCCTCGGCTACGATCCGTACGC
GAATCCGCCGGACTATGTTAAAGGCCAATCGATGCTTGGGGGAGAGGCCA
GCTTTCTAGACAT
FMO09084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango13-RG | 4728 | CG32632-RG | 1881..2918 | 9..1046 | 5085 | 99.5 | Plus |
| Tango13-RD | 4534 | CG32632-RD | 1687..2724 | 9..1046 | 5085 | 99.5 | Plus |
| Tango13-RC | 3344 | CG32632-RC | 1687..2724 | 9..1046 | 5085 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13584156..13584398 | 298..540 | 1215 | 100 | Plus |
| X | 23542271 | X | 13584861..13585042 | 540..721 | 910 | 100 | Plus |
| X | 23542271 | X | 13577506..13577664 | 9..167 | 795 | 100 | Plus |
| X | 23542271 | X | 13585894..13586058 | 857..1021 | 715 | 98.2 | Plus |
| X | 23542271 | X | 13585690..13585828 | 719..857 | 695 | 100 | Plus |
| X | 23542271 | X | 13580048..13580185 | 161..298 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:34:45 has no hits.
FMO09084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:36:00 Download gff for
FMO09084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango13-RC | 1679..2723 | 1..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:17 Download gff for
FMO09084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango13-RC | 1680..2724 | 1..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:43 Download gff for
FMO09084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango13-RC | 1680..2724 | 1..1046 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:43 Download gff for
FMO09084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13585894..13586054 | 857..1017 | 98 | -> | Plus |
| X | 13585691..13585827 | 720..856 | 100 | -> | Plus |
| X | 13577499..13577664 | 1..167 | 97 | -> | Plus |
| X | 13580055..13580185 | 168..298 | 100 | -> | Plus |
| X | 13584157..13584397 | 299..539 | 100 | -> | Plus |
| X | 13584861..13585040 | 540..719 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:17 Download gff for
FMO09084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13479927..13480087 | 857..1017 | 98 | -> | Plus |
| arm_X | 13478190..13478430 | 299..539 | 100 | -> | Plus |
| arm_X | 13478894..13479073 | 540..719 | 100 | -> | Plus |
| arm_X | 13479724..13479860 | 720..856 | 100 | -> | Plus |
| arm_X | 13471532..13471697 | 1..167 | 97 | -> | Plus |
| arm_X | 13474088..13474218 | 168..298 | 100 | -> | Plus |
