FMO09090.5prime Sequence
1149 bp (1040 high quality bases) assembled on 2010-08-09
> FMO09090.5prime
CAGTCGACATGGCCAATTTTGACGATACGTTGCAACGCGCCCGCCTTGCC
TTTTCCAGTGGAAAGACCAGGAATGTCAGCTTTCGACGCAAGCAGCTGGA
GAATTTGCTGCGTTGCTATGAGGAGCACGAGAACGAGATCATCAGCGCCT
TGGAGGCGGATCTGCGACGTCCCAAGCAGGAGAGCCTCATCGTGGAAACG
GAATTCATGAAGAACGACATCAGGCACATCCTATTCCAGCTCGACGAGTG
GGTGCAGTCGGAGAAGCCGCCCAAGTCGTTTGTGAACATGATGGACGACG
TCCAGATCTACAATGACCCCTTCGGAGTGGTTCTGGTGATCGGCGCCTGG
AACTACCCGCTGCAGCTGCTGCTCGTGCCAGTGGCTTCCGCCATCGCCGC
CGGAAACTGTGTGGTGATCAAGCCCAGCGAGATTGCCGCCAACTGCGCCA
AGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGATTGCTATCCA
GTTGTCTGCGGTGGACCCAGCGAAACGGCGGAGCTGCTCAACCAGCGTTT
CGACTACATCTTCTACACGGGCTCCACGCGCGTAGGCAAGATTATCCACG
CCGCGGCCAACAAGTACTTGACCCCCACCACCTTGGAGCTGGGTGGCAAA
AGCCCCTGCTACATTGACAAATCTGTGGACATGCGCACTGCGGTCAAGCG
CATCCTGTGGGGCAAGCTGATTAACTGCGGACAGACCTGCATCGCTCCGG
ACTACATCCTCTGCTCCAAGGAGGTGCAGGAGAAGTTCATCGTGGAGGCC
AAGGACGTGCTGAAGGAATGGTACGGCGAGAATATCCAGAGCAGTCCGGA
TCTAAGCCGTGTGATCAACGCCAACAACTTCCAGCGCCTTCTTGGCCTAA
TGAAGTCCGGCCGCGTGGCCGTCGGAGGTAACTACGATGCCAGCGAGCGT
TTCATCGAACCACATCTTGGTGGACGTGAAGGAGACGATCCATCATGGAA
GGAGGAGATCTCGGCCCATCTTGCCCATCTTCAATGTGGAAAGTGCCTAC
GATGCATCAGGTTCAATCAATGCCGAAAAAAAGCCGCTTGTATTTACGGT
CTCCACTCGATTAGCTAGTTAAGGATCAGGCGGAACCACCACGGCCGAT
FMO09090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-RU | 2115 | CG11140-RU | 193..1348 | 9..1149 | 5230 | 97.8 | Plus |
| Aldh-III-RQ | 2923 | CG11140-RQ | 1180..2335 | 9..1149 | 5230 | 97.8 | Plus |
| Aldh-III-RS | 2233 | CG11140-RS | 320..1475 | 9..1149 | 5230 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7469614..7469847 | 884..651 | 1170 | 100 | Minus |
| 2R | 25286936 | 2R | 7470393..7470617 | 489..265 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 7470702..7470883 | 266..85 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 7469909..7470072 | 652..489 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 7469381..7469557 | 1055..884 | 550 | 93.8 | Minus |
| 2R | 25286936 | 2R | 7473288..7473346 | 85..27 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:38 has no hits.
FMO09090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-17 15:35:54 Download gff for
FMO09090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RO | 1169..2328 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:44 Download gff for
FMO09090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RS | 312..1471 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:13 Download gff for
FMO09090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RS | 312..1471 | 1..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:13 Download gff for
FMO09090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7470702..7470882 | 86..266 | 100 | <- | Minus |
| 2R | 7473288..7473346 | 27..85 | 100 | <- | Minus |
| 2R | 7469360..7469557 | 884..1075 | 94 | <- | Minus |
| 2R | 7469615..7469845 | 653..883 | 100 | <- | Minus |
| 2R | 7469909..7470072 | 489..652 | 100 | <- | Minus |
| 2R | 7470394..7470615 | 267..488 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:44 Download gff for
FMO09090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3356865..3357062 | 884..1075 | 94 | <- | Minus |
| arm_2R | 3357120..3357350 | 653..883 | 100 | <- | Minus |
| arm_2R | 3357414..3357577 | 489..652 | 100 | <- | Minus |
| arm_2R | 3357899..3358120 | 267..488 | 100 | <- | Minus |
| arm_2R | 3358207..3358387 | 86..266 | 100 | <- | Minus |
| arm_2R | 3360793..3360851 | 27..85 | 100 | <- | Minus |
