FMO09202.5prime Sequence
894 bp (894 high quality bases) assembled on 2010-09-13
> FMO09202.5prime
CAGTCGACATGGGCTCCCGTTCACGTACACCCAGTCCGTCGGGCAAGCGA
CGCCACCATAAGAGCAAGCACAAAAAACGCAGTAAGTCCCACCACGACCA
CGAGCGGCCCAGCACAAGAACGGATAGAGACAAGTCCTCGGAGGTGAACA
ACCATGGACGACATCGCGAACGGGACAGGGACCGCGAGCGGGATAGACAC
CGCAGCGACCGACACACTGAGCGCGACTACCGTCACTCCCCCTCGATCCT
GAAATCCCGAAAACGCTCCAGCTCGTCGAGCAGCGACAGTCAGTACTCCG
AGCAGGAGTCGCAACGTAGCAAACAGAAGCGCAGCCGCTTTAAGAAGCTG
GATGAGCAAAACCAGATGCAGGTCGAACGCCTGGCCGAGATGGAGCGGCA
GCGTCGGGCGAAGGAGCTCGAGCAAAAGACAATCGAAGAGGAAGCCGCTT
ATTTTTATAGAGATGCTGGTAAAAAAGCGCGTCGAGGAGGAGCTAGAAAA
GCGTCGCGACGAAATCGAACAGGAGGTCAATCGACGCGTTGAGACCGCCA
AGGCTGAGATGGAGCGCGAAATGATGCTGGAGCTGGAGCGGCGGCGAGAG
CAGATACGCGAAGAAGAACGCCGGCGCGAGGAGGATGAAAAACAAAAACG
CGAAGAGCTCGAAGAAATTTTGGCCGAAAACAATCGCAAAATCGAAGAGG
CGCAAAGAAAACTGGCCGAAGAACGGTTAGCAATAATCGAGGAGCAGCGC
CTTATGGACGAGGAGCGGCAACGCATGCGCAAGGAGCAGAGAAGCGCGTC
AGGAAGAGCAGAATGTCATATTAGGCAAAACAATTCCAGGCCCAAGCTAT
CGTTCTCCCTGAAACCGGGCGCATTAGCAAGCTTTCTAGACCGT
FMO09202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31712-RA | 1491 | CG31712-RA | 129..999 | 8..876 | 4155 | 98.7 | Plus |
| CG31712-RB | 3159 | CG31712-RB | 129..751 | 8..631 | 3005 | 98.9 | Plus |
| CG31712-RB | 3159 | CG31712-RB | 2417..2667 | 629..876 | 1165 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9937658..9938006 | 356..8 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 9937237..9937512 | 631..355 | 1245 | 97.5 | Minus |
| 2L | 23513712 | 2L | 9935259..9935424 | 876..714 | 665 | 97.6 | Minus |
| 2L | 23513712 | 2L | 9935485..9935571 | 715..629 | 435 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 3512..3540 | 672..644 | 109 | 86.2 | Minus |
FMO09202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:19 Download gff for
FMO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31712-RA | 131..1007 | 1..876 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:35:09 Download gff for
FMO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31712-RA | 123..999 | 1..876 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:56 Download gff for
FMO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31712-RA | 123..999 | 1..876 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:56 Download gff for
FMO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9935259..9935423 | 715..876 | 97 | <- | Minus |
| 2L | 9935486..9935569 | 631..714 | 100 | <- | Minus |
| 2L | 9937238..9937510 | 357..630 | 97 | <- | Minus |
| 2L | 9937658..9938012 | 1..356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:35:09 Download gff for
FMO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9935259..9935423 | 715..876 | 97 | <- | Minus |
| arm_2L | 9935486..9935569 | 631..714 | 100 | <- | Minus |
| arm_2L | 9937238..9937510 | 357..630 | 97 | <- | Minus |
| arm_2L | 9937658..9938012 | 1..356 | 99 | | Minus |
