FMO09205.5prime Sequence
870 bp (870 high quality bases) assembled on 2010-09-13
> FMO09205.5prime
CAGTCGACATGTCTGGAACATCGACCTCTGAACGCTCCAACTCCGAAGAC
AGCCCGTTGAATCCCTGCCTAACGGAGGTCCTCAGGAATTGTGCCAACAT
TCAGTCGCTGGAGAGCTTGAACTACGAATATAACGACGTTTTGCTGACCG
AAGACAACGTGGGGAAGATGATTACGCCGAATCCGTATTCCTTTAGTGGC
AACATTTCCATCAGCAGTTGTCCAAGTGAAGATGTATCATTTTCGGAAAG
CATCCTAGAGGACAACGGACGCATTTCGCTGGCCTATGAGAACCTGAAGA
CAATTCCGCGGCGACTGGCCGACAAATTCGCAGCGCAGACCAAGTTTCTC
GATTTGAGTCACAATGATTTCCGAAACTTGAGATTTCTCTCTTTTTTCGA
GGATCTGGACACTTTAATCCTGGACCGCAACGTAAACCTGGATTTTTTCA
CTTTTCCTTATTTGCCGAGCTTAAGGATCTTGTGGATCAACAATTGCGAT
ATAGCAAATATAACCGATTGGATACACCGCATCGAACGGCACTGTCCTGC
GCTGGATCAGCTCTCTTGCATGGGGAATCCTGGCATCCGCACAGTTTTCG
GGGGCCAAGGACCCCGCGAGTATATACTACAGGTGCTTCCCCAGCTAAAA
TATCTCGATGGACTTCCAACCAGCAGGAATGCAGCTTATGCGACGCTGTC
TTCCTCACAAGGACAGGGTCCGGACTCCACGAGCAATTCGGAAAAGCCTC
CACTCGCATCCGCATTCACTTTCAAGGACATCATCCGTCCAAAGTTATTC
CAGAAAAATCGCACAGCGGGACGGATGTTTGGCAAGGGCTCCTCCAACAA
ACGCAAGCTTTCTAGACCAT
FMO09205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31274-RB | 1399 | CG31274-RB | 122..961 | 9..852 | 4015 | 98.7 | Plus |
| MESK4-RB | 1488 | CG31447-RB | 112..951 | 9..852 | 4015 | 98.7 | Plus |
| MESK4-RA | 1390 | CG31447-RA | 112..951 | 9..852 | 4015 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16989020..16989455 | 50..485 | 2090 | 98.6 | Plus |
| 3R | 32079331 | 3R | 16993232..16993667 | 50..485 | 2090 | 98.6 | Plus |
| 3R | 32079331 | 3R | 16989518..16989877 | 484..846 | 1650 | 98.9 | Plus |
| 3R | 32079331 | 3R | 16993730..16994089 | 484..846 | 1650 | 98.9 | Plus |
| 3R | 32079331 | 3R | 16988925..16988968 | 9..52 | 220 | 100 | Plus |
| 3R | 32079331 | 3R | 16993137..16993180 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:55 has no hits.
FMO09205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:15 Download gff for
FMO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31274-RB | 1..845 | 9..857 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:35:03 Download gff for
FMO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK4-RA | 105..956 | 1..857 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:52 Download gff for
FMO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK4-RA | 105..956 | 1..857 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:52 Download gff for
FMO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16989023..16989454 | 53..484 | 98 | -> | Plus |
| 3R | 16988918..16988968 | 1..52 | 92 | -> | Plus |
| 3R | 16989519..16989887 | 485..857 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:35:03 Download gff for
FMO09205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12814640..12814690 | 1..52 | 92 | -> | Plus |
| arm_3R | 12814745..12815176 | 53..484 | 98 | -> | Plus |
| arm_3R | 12815241..12815609 | 485..857 | 98 | | Plus |
