FMO09209.5prime Sequence
1125 bp (961 high quality bases) assembled on 2010-09-13
> FMO09209.5prime
CAGTCGACATGAAGAGCTGGCTGAAGATCTCGCTGCTGCTGTGCACGTTT
GGCTTTTTCCGGGAGTTTCGACCTTCGGAGCCGTACGTCACAGAGTACCT
AGCCTCGGATTATGGCAACCTGACGACGGATCAAATCTATCAGGATGTGT
ATCCCTTCGGCACGTACTCGGTGCTGGCCCAGCTGGTAATTGTGTTCCTC
ATCACAGATCTGGTGAGGTACAAACCGGTTATCGTGCTATCGGCACTGGC
TGGCATTACCCTGTTCTCCATGCTTATCTGGACGGAAACCGTGGGAATGC
TGCAGGTGGCCCAAGTGTTTTTTGGCACCTTTACGGCCGCTGAGGTGGCC
TACTACACGTACATGTACGCCAAGGTCAACAAGGAGCAGTATCAGGTAGT
CACGGGCCACACGCGAGCTGCCATCTTGAGCGGCAAGTTCCTCGGCGGCC
TGTTTGCCCAGATTTTGGTGTCCACCGATAGCATGGATTACCGGCAGCTG
CACTACCTCTCGCTGGCCACGCAGCTAATCTCCCTGGCCGTGTCCCTGTT
CCTGCCCAGTGTGCCGCGTAGCCTCTACTTCTACGCGGGTTCCGAGAAGA
TTACCATTGCCGACGGAGAAGAGACCTCACCAAAGTTCTCCTTTGCCAAC
GCATGCCGCCTGCTGTGGTACCACCTCGTTAGTTCCTACTCCAATCCCGT
CGTGCTGCAGTGGAGCATATGGTGGGCATTGGCCACCTGTGGTCAAGTTC
AAGTGATCTCCTACATCCAGTTCCTGTGGAAAGAGGTGGCACCGAATAAG
CTCAGTGTTTACAATGGCGGAGTGAGGCCGTGGCCACGCTGCTGGGTGCT
ATTGGAGCCATTCTGGCGGGCCTGCTGAACTCCAATAAGCGACGGGGATC
GTATATGATGGGCATATCCATCTGTGCCGCTGCCCTGGGCGCTCTGCTCT
CTATGCCGCCAAAGCAATTGATCTGGGTGGCCTACGTGAACTATGTGGCT
TTTCTGCACGTATTCTTCTTCTTCATCACGTGGCGGTGGCCGTGTGGGCC
AAAATCTGGTGGAGAAAGATTCGGCTTTGAACTTCGCAATACAAACTTGT
GGGGCTGATACCCGCAACACTTCAG
FMO09209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17036-RB | 1680 | CG17036-RB | 229..1316 | 5..1086 | 5050 | 98.2 | Plus |
| CG17036-RA | 1663 | CG17036-RA | 127..1214 | 5..1086 | 5050 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12699769..12700518 | 754..5 | 3750 | 100 | Minus |
| 2L | 23513712 | 2L | 12699389..12699706 | 1064..753 | 1110 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:30:48 has no hits.
FMO09209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:13 Download gff for
FMO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 227..1316 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:58 Download gff for
FMO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 125..1214 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:50 Download gff for
FMO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 125..1214 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:50 Download gff for
FMO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12699395..12699706 | 753..1058 | 95 | <- | Minus |
| 2L | 12699771..12700519 | 1..752 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:58 Download gff for
FMO09209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12699395..12699706 | 753..1058 | 95 | <- | Minus |
| arm_2L | 12699771..12700519 | 1..752 | 99 | | Minus |
