FMO09211.5prime Sequence
648 bp (648 high quality bases) assembled on 2010-09-13
> FMO09211.5prime
CAGTCGACATGACCACGCGTGGAATTCGGTGCAAGAAGTCCACATTGACG
GAGTTGAAAATCGCCGTGATCGGAGCGCCCAGTGTTGGCAAAAGCGCCCT
AATTGTGCGTTTCTTGACAAAGCGTTACATCGGGGAGTACGATCATCAGA
CTGAGAATCGCTACAAGCACGAGGCTATGGTGGATGGCGAACCGGTGCTC
TTTGAAATACTAGACACATGTCCCAAGGCTGAAGACGAATACCCCAATGC
AGCTGAGCTCGTTCAGTGGGCCGATGGCCTATTGCTGGTCTACTCGATAA
CAGATCGCAAGAGTTTCAACTATATACGCCGTGCCAAATCCGATCTTCAG
TCCGATACACCCGTCCAACTTTGTGCCAACTTTTGTGGATATGGTGCACC
TGCGCCAGGTGAGCCGCGACGAGGGCGAAATCCTGGCCAAGGACTTTTAG
TGCAAGTTCAGCGAGGTCTCCGCCGCCGACCACGTCGACCAGGTGGCCGA
GGTTTTCAACGAGCTGTGCAAAGAGGTGCTGGCCTCCAAGCGCAAGTCCA
AGCAGAGTCTGCTGGAAAGGATGCTCGGTGGAGCACGACCCTACAGCCGA
GGGAAGAGCGACAGCAATTTGCCAAAAGACGCAAGCTTTCTAGACCAT
FMO09211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8519-RA | 1303 | CG8519-RA | 624..1244 | 9..630 | 3025 | 99.2 | Plus |
| CG8519-RB | 709 | CG8519-RB | 117..650 | 96..630 | 2590 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6708538..6708941 | 226..630 | 1915 | 98.8 | Plus |
| 3L | 28110227 | 3L | 6708348..6708480 | 96..228 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 6705483..6705570 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:31:16 has no hits.
FMO09211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:22 Download gff for
FMO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8519-RA | 1..627 | 9..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:35:14 Download gff for
FMO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8519-RA | 624..1251 | 9..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:02 Download gff for
FMO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8519-RA | 624..1251 | 9..636 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:02 Download gff for
FMO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6705483..6705570 | 9..96 | 100 | -> | Plus |
| 3L | 6708349..6708479 | 97..227 | 100 | -> | Plus |
| 3L | 6708540..6708948 | 228..636 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:35:14 Download gff for
FMO09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6698583..6698670 | 9..96 | 100 | -> | Plus |
| arm_3L | 6701449..6701579 | 97..227 | 100 | -> | Plus |
| arm_3L | 6701640..6702048 | 228..636 | 98 | | Plus |
