FMO09212.5prime Sequence
821 bp (821 high quality bases) assembled on 2010-09-13
> FMO09212.5prime
CAGTCGACATGACCAAGATTTGGGAGGAGAAGAAGCGGGCCCTCAAGGCA
CTGGACTACTTTGACTTTCTCGATGACGATCAGATCGTGGAAGCTTGCCG
ATATGGGAGGCTGAAGCAATTCGATCCACTGGATACCATATTCTGTGAGG
ATATAGGATCCATGACCAATGTCCACTTCGTGCTCAGTGGAGAATGTCTG
ATACTCCAGTGTCTGAATATAAAGGTTACTATGAAAAGGGGTAAAAAGGT
ATATGATCTTTTGCCGGCGTCGGAAGGCGATGTGTCCAAAATGTTTAGAA
AAGCCGTGAGATCAACATTTTCCTCGCAAAGTACCAACGAAGATCAGTCA
AAAATAGATATTCTTGATCTTGTGGCAAGTACGAGTTCCAGTTCCACGGG
AGATGCGCAAAAAAGTGCTCTCAACCGCAAGACACCCACATTTTTTTTTT
ATTTCATCGATGTGGGTACCATAACATTTGGAGGCATTTTCGGCTTGGGC
GAGAAAATGGAAAATCGCGTGATAATGGCAAGGAGCACGGTTCAATGCCT
GATACTTCCCAGATTTTTCCTGCTGGAAAAGAAACAAAATCCCGGCAATG
TTTGGGAGCGCAGACTGTTGTATGTGGGCGTCATGGTTCCATCCAGGGAA
GCCCTTTTTGCCCACTATCGTAAAGCTTGCGACTGGAAGAAATTCAAAAA
CGACCTAATTTCCGAGACCTTGAAGCCCTCCGATAATGACATCACACACA
TCGAAGACGTTCCCATAATTTGCAGAATTGTAGAATCACCAGAGGATCTC
AATGCAAGCTTTCTAGACCAT
FMO09212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14693-RC | 1738 | CG14693-RC | 681..1477 | 7..803 | 3880 | 99.1 | Plus |
| CG14693-RB | 1153 | CG14693-RB | 96..892 | 7..803 | 3880 | 99.1 | Plus |
| CG14693-RF | 2195 | CG14693-RF | 787..1212 | 7..432 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10811842..10812194 | 803..451 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 10812798..10813006 | 431..223 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 10813058..10813202 | 226..82 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 10813465..10813541 | 83..7 | 385 | 100 | Minus |
| X | 23542271 | X | 16008303..16008377 | 474..548 | 225 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:31:12 has no hits.
FMO09212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:21 Download gff for
FMO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RC | 675..1482 | 1..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:35:12 Download gff for
FMO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RB | 90..897 | 1..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:00 Download gff for
FMO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RB | 90..897 | 1..811 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:00 Download gff for
FMO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10811837..10812213 | 432..811 | 97 | <- | Minus |
| 3R | 10812798..10813004 | 225..431 | 100 | <- | Minus |
| 3R | 10813060..10813200 | 84..224 | 100 | <- | Minus |
| 3R | 10813465..10813543 | 1..83 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:35:12 Download gff for
FMO09212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6637559..6637935 | 432..811 | 97 | <- | Minus |
| arm_3R | 6638520..6638726 | 225..431 | 100 | <- | Minus |
| arm_3R | 6638782..6638922 | 84..224 | 100 | <- | Minus |
| arm_3R | 6639187..6639265 | 1..83 | 95 | | Minus |
