FMO09218.5prime Sequence
873 bp (873 high quality bases) assembled on 2010-09-13
> FMO09218.5prime
CAGTCGACATGAGTCAGTCTTGTATACCAGTGAGCGCAAAGATGTCGAAG
GCAAAGAAGGTTTTGGATGAAGCCCGAGAAACTCACAATCCCGAGTTGGA
TTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTTCA
ACATGTCCAACATCACGCGCTTGACCCTGTCCCACAACAAGATCAGCGTA
ATCAGTCCGGGAATCGCGAACCTACTGAATCTGGAGATCCTGAACCTCTC
GAACAACCAGCTGACCGAACTGCCCGTTTCGCTGTCGTCCATGCCAAAGC
TACGCATCCTCAATGTGTCCATCAATCGGCTGATAAATCTTCCTCGCGGC
TTTGGAGCCTTTCCGGTGCTGGAAGTGCTCGACCTGTCCTACAACAATCT
CAACGAACAGGTCCTGCCTGGTAATTTCTTTGGTATGGAGACACTGCGTG
CTCTGTATCTGGGCGACAATGACTTCGAGTATATACCGAAGGAGGTGGGT
CAGCTGAAGAATCTGCAGATACTCGGATTGCGTGACAACGATCTTCTGGA
ATTGCCCCGCGAAGTTGGGGATTTGGTGCGACTGCGGGAGCTACATATTC
AAAACAATAGGCTGCAGGTGCTGCCACCAGAGATCGCCCAGTTGGACCTA
CTGAGCAACAAGTCGGTCATGAAGATGGAGGAGAATCCCTGGGTCAATCC
CATCGCCGAGCAATATCTGCTGGGCATTAGTCACGTCATCGACTACCTCA
AAACGGAGACCTATAAGATCATCTACAACCGCCACTTGCAAGCAGGACGC
AGTGGACCGCCGCCACCCAAAGCTGACAAAGCAAGAGGCCTCTCGAATTC
GCGCAGCAAGCTTTCTAGACCAT
FMO09218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-RC | 1716 | CG9031-RC | 606..1454 | 9..855 | 4195 | 99.8 | Plus |
| ics-RB | 1063 | CG9031-RB | 25..873 | 9..855 | 4195 | 99.8 | Plus |
| ics-RA | 1335 | CG9031-RA | 297..1145 | 9..855 | 4195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13639860..13640481 | 769..148 | 3110 | 100 | Minus |
| 2L | 23513712 | 2L | 13641110..13641248 | 147..9 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 13639709..13639796 | 855..770 | 340 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:34:38 has no hits.
FMO09218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:13 Download gff for
FMO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 16..872 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:01 Download gff for
FMO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 289..1145 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:40 Download gff for
FMO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 289..1145 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:40 Download gff for
FMO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13639709..13639796 | 770..855 | 97 | <- | Minus |
| 2L | 13639860..13640481 | 148..769 | 100 | <- | Minus |
| 2L | 13641110..13641256 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:01 Download gff for
FMO09218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13639709..13639796 | 770..855 | 97 | <- | Minus |
| arm_2L | 13639860..13640481 | 148..769 | 100 | <- | Minus |
| arm_2L | 13641110..13641256 | 1..147 | 97 | | Minus |
