FMO09223.5prime Sequence
885 bp (885 high quality bases) assembled on 2010-09-13
> FMO09223.5prime
CAGTCGACATGTTGCGTAACAGGCTGATAGATGGAGTCAGGCGAATAAAA
CCCATACTTTGCGGGGGGCAATCCCTGCGATCCCTTGCCAATGGCGCGAC
TTCAAAGCTGACAACCATAGAGGTCGATGATAGGAGTGGGATTGCCACTC
TGTCAATGAACCTGCCACCGGTGAACACTTTGACCATGGAGCTGATGCAC
GACCTCATCGATTCAATCAATCAGATTGAGAGCAACAAGAGCCGCGGTCT
CATCCTGACTTCAAGCAATGACAAGGTCTTCTCCGCCGGCCTCGATCTCA
ACGAGATGCTGAATCCGGATGTGGAGCGACTGCGATTATTCTGGACTCGG
TTCCAGGATTTGTGGCTGGCCCTCCATCTTTGTGGCCTTCCCACAGCAGC
GGCAATCAATGGACACTCACCTGCCGCAGGCTGTGTCCTGGCAATTTTTC
TGTGAGTATCGCGTGATGTTGCCGAATCTCTTTATCGGTATACATGCCAC
CCGGTTTAGCTTCGTCATCTCGAAGTGGATGATGAACTCGTACCAGAGCG
TTCTACCCCGCAGAATTGTGGAGCGAGCGCTGAATCAAGGTAAGCTCTTC
GCCAGCCAGGAAGCTCTGGATGTGGGCCTTGTGGACGAGATCGCGTGTAG
CAAAGAGGAAGCGCTCTCCAAGTGCGCAGCCTTCATAGCCACCTTTGACA
AGACCAACCCGGTGGCCAGGTGCCTAACCAAGCGAATGTGTCGGGAGCCA
GATGTGCGGGAGCTGCTTCAGGATAGAGCTGCGGATCTGAAGGAGTGCGT
CGACTATGTCACTACTCCGCTATTCCAGGAGGGACTCTGTGCCCACTTGG
AGGGTCTCAAGAAGAGAAGCAGCTTTCTAGACCAT
FMO09223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4592-RB | 1105 | CG4592-RB | 108..967 | 8..868 | 4220 | 99.4 | Plus |
| CG4592-RA | 1011 | CG4592-RA | 108..967 | 8..868 | 4220 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9922266..9922722 | 411..868 | 2180 | 98.9 | Plus |
| 2L | 23513712 | 2L | 9921740..9921995 | 8..263 | 1280 | 100 | Plus |
| 2L | 23513712 | 2L | 9922064..9922211 | 264..411 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:41 has no hits.
FMO09223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:11 Download gff for
FMO09223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 98..962 | 1..868 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:34:53 Download gff for
FMO09223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 103..967 | 1..868 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:47 Download gff for
FMO09223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 103..967 | 1..868 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:47 Download gff for
FMO09223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9921735..9921995 | 1..263 | 98 | -> | Plus |
| 2L | 9922064..9922210 | 264..410 | 100 | -> | Plus |
| 2L | 9922266..9922722 | 411..868 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:34:53 Download gff for
FMO09223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9921735..9921995 | 1..263 | 98 | -> | Plus |
| arm_2L | 9922064..9922210 | 264..410 | 100 | -> | Plus |
| arm_2L | 9922266..9922722 | 411..868 | 98 | | Plus |
