FMO09228.5prime Sequence
587 bp (587 high quality bases) assembled on 2010-09-13
> FMO09228.5prime
CAGTCGACATGACCATCAAAAATTCGACTTGCTTTCGACATATTTGGGTT
TCCACAGATGACAAACGAATTGCCATTGAGGCACAAAAGTATGGTGCCAT
AATACATCATCGGCCTGAGAAATTCGCCAGAGACGACACTCCTTCACTTC
ATGCCATTTCGGAGTTCCTAGATGTTCATAGAAGTATTCATGACTTTGCT
CTATTCCAATGCACATCTGTATTCCTGAAAACCAAGTATATTCAAGAGGC
TGTTCGAAAGTTTGAGTCCCATGACTGTGTTTTTGCCGCTAAGAGATCAC
ATTATCTGCGATGGAAGGTGGTCGATGGTGAATTGATGCCAGCGGAATTC
GATTTGAGTGCCAGGCCAAGACGCCAAGATTGGCAGGGTGATATTGTAGA
GACAGGAATGTTTTACTTCTCGAGGAGGAAACTGGTGGACAGTGGGCTAC
TTTTAAACAATAGGTGCTCCGTTGTGGAAATCGATGCCAAGGATAGTCTG
GAAATTGACTCTAGCCACGATCTGACTCTAGCCAAATACATCTTAAGTAG
TGAAACAAAAACCGAGTTAGCAAGCTTTCTAGACCAT
FMO09228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csas-RA | 758 | CG32220-RA | 153..713 | 9..569 | 2760 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19988072..19988347 | 569..294 | 1335 | 98.9 | Minus |
| 3L | 28110227 | 3L | 19988401..19988605 | 295..91 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 19988662..19988743 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:34:17 has no hits.
FMO09228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:08 Download gff for
FMO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 110..673 | 9..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:49 Download gff for
FMO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 153..713 | 9..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:29 Download gff for
FMO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csas-RA | 153..713 | 9..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:29 Download gff for
FMO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19988072..19988345 | 296..569 | 98 | <- | Minus |
| 3L | 19988401..19988605 | 91..295 | 100 | <- | Minus |
| 3L | 19988662..19988743 | 9..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:49 Download gff for
FMO09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19981172..19981445 | 296..569 | 98 | <- | Minus |
| arm_3L | 19981501..19981705 | 91..295 | 100 | <- | Minus |
| arm_3L | 19981762..19981843 | 9..90 | 100 | | Minus |
