FMO09230.5prime Sequence
335 bp (335 high quality bases) assembled on 2010-09-13
> FMO09230.5prime
CAGTCGACATGGCCGACGAAACAGAGCAGCTCAGTCAGGTGATTTTGCCG
GTAAAGGAGCCTTTGGATCTCATCCGATTGAGTTTAGATGAGAAGGTGTA
CGTAAAGATGCGCAACGAGCGGGAACTGCGAGGACGTCTTCACGCCTTTG
ATCAACATTTGAACATGGTGCTCGGCGATGCGGAGGAGACGGTGACCACT
GTGGAGATCGACGAGGAGACCTATGAGGAGGTGTACAAGACCGCCAAGCG
CACTATTCCCATGCTATTCGTTAGAGGCGATGGAGTCATCCTGGTTTCGC
CACCCATGCGGGTGGGCGCAAGCTTTCTAGACCAT
FMO09230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LSm3-RB | 491 | CG31184-RB | 105..413 | 9..317 | 1530 | 99.7 | Plus |
| LSm3-RA | 643 | CG31184-RA | 257..565 | 9..317 | 1530 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23996766..23996939 | 144..317 | 855 | 99.4 | Plus |
| 3R | 32079331 | 3R | 23996588..23996706 | 26..144 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:34:10 has no hits.
FMO09230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:05 Download gff for
FMO09230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31184-RA | 257..569 | 9..323 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:46 Download gff for
FMO09230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LSm3-RA | 257..569 | 9..323 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:25 Download gff for
FMO09230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LSm3-RA | 257..569 | 9..323 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:25 Download gff for
FMO09230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23996518..23996538 | 9..29 | 100 | -> | Plus |
| 3R | 23996592..23996705 | 30..143 | 100 | -> | Plus |
| 3R | 23996766..23996943 | 144..323 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:46 Download gff for
FMO09230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19822240..19822260 | 9..29 | 100 | -> | Plus |
| arm_3R | 19822314..19822427 | 30..143 | 100 | -> | Plus |
| arm_3R | 19822488..19822665 | 144..323 | 97 | | Plus |
