FMO09231.5prime Sequence
851 bp (851 high quality bases) assembled on 2010-09-13
> FMO09231.5prime
CAGTCGACATGTTGCAAAACAACGCGGTGCGCACTTTGCAATACGACAGT
GAGATCCGTGTGGCCCAGCAGCCAAGTCTCTCAGAACCGAGAGTTTATGA
CTCCCATATCAGCATTACCTCACAACCCAGGCCGGAGGCTCCACGCATCC
CGCTGCCAGTGCCAATTGCCACGGTTACGGGAAGCCGGACGCTTATCCCA
CTTTCCGGATACGATTGCCTAGCAGATCTGCCGTCCGTACATATTGAACA
GACCTTTGAGCTTAACGATGCCCTAACAGGCGTCTCCTCGGAGAATCGAT
ATGTGGTGCGATCTCCACTGGGTGATGCCATTTTCGCGGCCAACGAGAGT
TCCACAGAAAAAAATCGACTACTTTGGGGAGCTGGTCGACCCTTTCAGAT
GCACCTGCTGGATAAAACGCACCAGGAAGCTCTGGTTTTTCGCAAATAAC
TAGCGATGGGATCCATGTGCTGCCAGGCAAAAAGTCTAGAAATTTGGATA
CCACCTGGTAATTTGCTGGGTAAAGTGGTGCAGTCGCCCACCTTCATGCA
GCCGGAGTTCTTTATCGAAGACGAAAGCACAGGACAACTAACATTCTGTG
TAGAGGGTCCTGTCGGTTTAGGATTCTGCTGCTTCAGTTTGCCCAAAGAT
TGTTATTTTAAGATCCATTCGGGAGGCAATATGAGGGCTTCCATAGACCA
CAAATGGCTCGCAAGCAAGTCTCAGTACACCACAAATATATACTTTAGTG
ACGCCAAGCTAACCGCCAAGGAGCGGGCTTTGATACTGGGATCAGCCTTT
CTACTGGAATATCTATTCTTCCAAACCCGCTTTGCAAGCTTTCTAGACCA
T
FMO09231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9084-RB | 937 | CG9084-RB | 71..899 | 5..833 | 4100 | 99.6 | Plus |
| CG9084-RC | 955 | CG9084-RC | 71..917 | 5..833 | 3910 | 97.5 | Plus |
| CG9084-RE | 1253 | CG9084-RE | 476..1215 | 94..833 | 3670 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11217754..11218146 | 662..270 | 1950 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11218206..11218384 | 270..92 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 11217546..11217692 | 807..661 | 720 | 99.3 | Minus |
| 2R | 25286936 | 2R | 11219083..11219171 | 93..5 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:34:06 has no hits.
FMO09231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:04 Download gff for
FMO09231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9084-RB | 39..871 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:44 Download gff for
FMO09231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9084-RB | 67..899 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:24 Download gff for
FMO09231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9084-RB | 67..899 | 1..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:24 Download gff for
FMO09231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11217454..11217480 | 807..833 | 100 | <- | Minus |
| 2R | 11217547..11217690 | 663..806 | 99 | <- | Minus |
| 2R | 11217754..11218145 | 271..662 | 99 | <- | Minus |
| 2R | 11218206..11218382 | 94..270 | 100 | <- | Minus |
| 2R | 11219083..11219175 | 1..93 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:44 Download gff for
FMO09231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7105052..7105195 | 663..806 | 99 | <- | Minus |
| arm_2R | 7104959..7104985 | 807..833 | 100 | <- | Minus |
| arm_2R | 7105259..7105650 | 271..662 | 99 | <- | Minus |
| arm_2R | 7105711..7105887 | 94..270 | 100 | <- | Minus |
| arm_2R | 7106588..7106680 | 1..93 | 96 | | Minus |
