FMO09232.5prime Sequence
1110 bp (970 high quality bases) assembled on 2010-09-13
> FMO09232.5prime
CAGTCGACATGAGGGAATGCATTTCGGTTCACATTGGCCAAGCTGGTGTC
CAGATCGGCAATGCCTGCTGGGAACTTTACTGCCTGGAGCACGGCATCCA
GCCCGATGGCCATATGCCCTCCGATAAAACCGTGGGCGGAGGCGATGACT
CCTTCAGCACCTTCTTCAGCGAGACTGGAGCTGGTAAGCATGTGCCGCGT
GCCGTGTTCGTGGATCTGGAGCCCACTGTGGTGGATGAGGTGCGGACAGG
AACCTACCGCCAGCTGTTCCATCCGGAGCAACTGATCACCGGTAAGGAGG
ATGCGGCCAACAACTATGCCCGCGGCCACTATACCATCGGTAAGGAGATC
GTCGACGTGGTCCTGGACAGGATTCGCAAGTTTGCGGATCAGTGCACGGG
TCTGCAGGGATTCCTGGTCTTCCACTCCTTCGGCGGCGGCACTGGCTCTT
GATTTACGTCGCTGCTGATGGAGCGCCTGTCCGTGGACTATGGAAAGAAG
TCAAAGCTGGAGTTCTCCATTTACCCAGCACCACAAGTGTCCACAGCTGT
GGTCGAGCCATACAACTCGATCTTAACCACCCACACAACGCTGGAGCACT
CGGACTGTGCGTTTATGGTTGACAACGAGGCAATCTACGACATCTGCCGG
CGCAACTTGGATATCGAGCGACCCACCTACATGAATCTCAATCGCCTAAT
TGGCCAGATCGTTTCCTCCATTACGGCCTCGTTGCGCTTCGATGGCGCCC
TGAATGTGGATCTGACCGAGTTCCAGACCAATTTGGTGCCCTACCCACGC
ATTCATTTCCCACTGGCGACATACGCTCCCGTCATTTCCGTGGAGAATGC
CTACCATGAGCAACTGACCGTGGCCGAGATCACCAATGCCTGCTTCGAGC
CGGCCAACCAGATGGTCAAGTTTGATCCGCGTCGTGGCAAGTACATGGGC
CTGCTGCATGCTCTACCGCGGTGATGGGGGTGCCCAAGATGTGAACGCAG
CCATGGCCACATTCAGGAACAAGCGCCCTATCCAGTTCGTCGACTGATGT
CCACAGGCTTCAGGTGGCTTCACTATCAACCACCCACGTGTTTCTGGCGG
AATCTGGCAA
FMO09232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub85E-RA | 1560 | CG9476-RA | 102..1208 | 8..1108 | 5055 | 97.7 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 169..1225 | 34..1087 | 2870 | 85.2 | Plus |
| alphaTub84D-RA | 1980 | CG2512-RA | 534..1588 | 36..1087 | 2785 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7087256..7088267 | 34..1046 | 2780 | 85.2 | Plus |
| 3R | 32079331 | 3R | 7531286..7532295 | 36..1046 | 2695 | 84.7 | Plus |
| 3R | 32079331 | 3R | 9732277..9732804 | 538..11 | 2610 | 99.6 | Minus |
| 3R | 32079331 | 3R | 9731636..9732150 | 1052..537 | 2305 | 96.9 | Minus |
| 3L | 28110227 | 3L | 9682194..9682720 | 270..796 | 475 | 72.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:34:02 has no hits.
FMO09232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:03 Download gff for
FMO09232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 94..1160 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:43 Download gff for
FMO09232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 96..1162 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:23 Download gff for
FMO09232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 96..1162 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-26 15:34:23 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-03 19:36:43 has no hits.
