FMO09233.5prime Sequence
995 bp (967 high quality bases) assembled on 2010-09-13
> FMO09233.5prime
CAGTCGACATGTCCAACTACTACAGTCTACTACTACAAGCGGACACCTAC
GACGACGAGTCGATAGGCGACGAGCGTAGCGAAGAAGACACGGACGACGC
CAGCGAGACGGAGTTCCGCAGCCCCAGCCGCTACGGCGCCATGAATGGGA
CCTCCAACAGCAACAACATGGGCACCAACAGCGAACTGAAGGAGCAAATG
TACCAGCACAAGCTGTTCAACCTGCAGAAGCAGATGGAGGAACTGGGCCA
GCTGGTGCATCCGGAGTACTTGAAGCGCGTGAAGAAGCTGGACAGCCAGC
TAAAGGAGCGCCGACGCATGAACGAGGTCTACAAGGAGTACATGCGCGAG
TGCGTCGAACGGGACTATGTGCTGGAGAAGATGGCCGCCCAGAAGGAGTA
CGACGAAAAGATGATGGACCTCAAAGACAACCTGATCTCGGACTTCGAGG
ACCTCAAGCGTCAGATCGAGAACGAGCGCTTCAGCATCGAGCTGACCAAC
GATTCCATGGAGATCAAGACGACGATCACGCGCAAGCTGCGTCGTCGCCC
CAACGAACCGCTTCCGGTGATCGAGAAGCGCCGCAAGCCGGCCACCGGCC
AGCTGCTCGTCTACCAGCTGGATGATAAGGAAATCGAGTCGGACCTAAAG
ATCATCCAGCGTGGCAGACCGAATCCAGTTCCCCAGCAGAACGGCAGCGG
CTCCTACGGCAGTGGCTCCCAGCAGCAGCAATCGATGCACGTTCTGGCCG
AGCCGACCTCCAATAGCGGCCTGTGGAGACTCGCATCGAGGACAACAAGC
TGCTGTACGAGCGGCGATGGTTCTGCCGCGGCCAGCAGGTCTATGTCGAG
GGCAAGAGATGAGCAAGTTCGCGGCACCATTACGCCATTGGCAACGAGGT
GGTTTGGTGAAGCGCACCAACGAGACCAAGTAAGATCAACATGTCCCATC
TGGCCAAGGCAAGATCTCGATAAGCGCAAGAAGCTTTCTTAACCA
FMO09233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14220-RB | 1817 | CG14220-RB | 161..1134 | 8..973 | 4665 | 99.1 | Plus |
| CG14220-RA | 1312 | CG14220-RA | 161..1134 | 8..973 | 4665 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19600634..19601344 | 903..197 | 3340 | 99.3 | Minus |
| X | 23542271 | X | 19601404..19601514 | 196..86 | 555 | 100 | Minus |
| X | 23542271 | X | 19601612..19601691 | 87..8 | 400 | 100 | Minus |
| X | 23542271 | X | 19600486..19600556 | 973..906 | 240 | 95.8 | Minus |
Blast to na_te.dros performed 2014-11-26 14:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1489..1633 | 82..230 | 186 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6879 | 116..268 | 185 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6865 | 154..299 | 178 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7095 | 134..495 | 175 | 53.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6913 | 116..254 | 163 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2485 | 101..253 | 159 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6874 | 116..245 | 152 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2459 | 88..215 | 151 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 130..243 | 134 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2672 | 119..191 | 119 | 64.4 | Plus |
FMO09233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:03 Download gff for
FMO09233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14220-RA | 154..1146 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:40 Download gff for
FMO09233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14220-RA | 154..1146 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:20 Download gff for
FMO09233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14220-RA | 155..1147 | 1..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:20 Download gff for
FMO09233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19600473..19600561 | 902..985 | 91 | <- | Minus |
| X | 19600636..19601344 | 197..901 | 99 | <- | Minus |
| X | 19601404..19601512 | 88..196 | 100 | <- | Minus |
| X | 19601612..19601697 | 1..87 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:40 Download gff for
FMO09233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19494506..19494594 | 902..985 | 91 | <- | Minus |
| arm_X | 19494669..19495377 | 197..901 | 99 | <- | Minus |
| arm_X | 19495437..19495545 | 88..196 | 100 | <- | Minus |
| arm_X | 19495645..19495730 | 1..87 | 96 | | Minus |
