FMO09234.5prime Sequence
680 bp (680 high quality bases) assembled on 2010-09-13
> FMO09234.5prime
CAGTCGACATGGTGGAACCCATTTTCGAGTATCAATTTCGACTGATTTTA
ATCGGCGACAGCACCGTGGGCAAGAGCTCGCTGCTCAAATTCTTCACAGA
CGGCAAATTCGCCGAGTTATCCGATCCCACAGTTGGCGTCGACTTCTTTG
CCCGCCTCATCGAAATGAAGGACGGCACACAGATCAAGCTCCAGCTGTGG
GACACTGCTGGCCAAGAGCGCTTCCGTTCGATCACCAAGTCCTACTACCG
GAACTCGGTTGGCGTGCTGCTGGTCTACGACATATCGAATCACGCCAGCT
TCGAGCACATACCGCTGTGGATGATGGAGGCACAGCGTCACATTGAGCCC
CACCGCCCCGTTTTCGCATTGGTCGGCTGCAAACTGGACCTCATCAATGC
GGGCGGACACCGGGAGGTGACCACAGAGGAGGCACAAAAATTTTCCTAAC
AGCACGGTCTGCATTTCGTTGAGACGTCGGCCCGGTCTGGTGCCAATGTG
GAGGAGGCATTTCGCATGGTCACCCAGGAGGTGTACGCCCGCATTCGATC
CGGCGAATATAAGGCGGAGGATGGATGGGACGGCATCAAGTCTGGCTTTT
CGCGACCCAATAGTCTGGACTTTAATCTCGTCGTAGCAGAGCCGGAAAAG
TCATCATGTTGTGCAAGCTTTCTAGACCAT
FMO09234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab39-RB | 1406 | CG12156-RB | 306..959 | 9..662 | 3225 | 99.5 | Plus |
| Rab39-RA | 1129 | CG12156-RA | 306..959 | 9..662 | 3225 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7735762..7736309 | 115..662 | 2695 | 99.5 | Plus |
| X | 23542271 | X | 7735228..7735335 | 9..116 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:34:30 has no hits.
FMO09234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:12 Download gff for
FMO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 296..956 | 1..662 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:56 Download gff for
FMO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 299..959 | 1..662 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:36 Download gff for
FMO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 299..959 | 1..662 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:36 Download gff for
FMO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7735221..7735335 | 1..116 | 96 | -> | Plus |
| X | 7735764..7736309 | 117..662 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:56 Download gff for
FMO09234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7629254..7629368 | 1..116 | 96 | -> | Plus |
| arm_X | 7629797..7630342 | 117..662 | 99 | | Plus |
