FMO09235.5prime Sequence
761 bp (761 high quality bases) assembled on 2010-09-13
> FMO09235.5prime
CAGTCGACATGGGCTCGAACACTGGAGCTTGGATTCTACTGGGCCTGCTG
GCCGGCATCGCCTCTCTGTCTAGCGCTGCGAATATACAGCGAAATGAGGA
CCAGACGATTCTTCAGAACAATGGAAACACCTTCCTATCAAACGGAGCCG
GGCAAATCATTCGTGGACCCGATGGCAAAACAGTATTGATCGGATCCGAT
GGGCGCAGGATCATCACGGATGCCGACTCCAGCGAAGAGGACAGCTCGCA
CGATTATGGTCACGGTGGGAGCTATAACAATGTTATCATCAATGGTGGCT
CGGGATCCAGCGTAATTCATGGCGATGGACATAGCTTCATTGTTGGAGAT
GCGAGTCATGGAAGTTACATGAACAGCAATGGACGCAGTATTAGGATCAT
AAATGGTGCCATCGAACTCAATGATCACGGCCAGGTGTACACATTCAGTC
CAAAAGCAGCAGGCATTAACGAAAAGGAAACCGTCACCATCAACGGACAA
CCGGCTCAGGTGGAGTACTCCAATGGTGATATAGTCATCGAACTGGCCGA
TCATACGGTGATTGCCAAGATAGGTGGACGCACATTTCTGGGCGATCGCG
AATCCTTCGACAATCGGGATAAATTAGAGGCGGAGGCAAAGAACTATGCC
GATCGTATCCAGCAAGAGGTGCACGCCAATCTCCAGAAAACCATGGCTGA
TATTCAAAGGGATCTTCAGAATTCCCTGGGAAATATTTTCTATGCAAGCT
TTCTAGACCAT
FMO09235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18067-RB | 1530 | CG18067-RB | 282..1016 | 9..743 | 3660 | 99.9 | Plus |
| CG18067-RA | 808 | CG18067-RA | 18..752 | 9..743 | 3660 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20534653..20535321 | 75..743 | 3330 | 99.9 | Plus |
| 2R | 25286936 | 2R | 20534526..20534592 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:34:27 has no hits.
FMO09235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:11 Download gff for
FMO09235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18067-RA | 8..758 | 1..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:55 Download gff for
FMO09235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18067-RA | 6..756 | 1..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:35 Download gff for
FMO09235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18067-RA | 9..759 | 1..749 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:35 Download gff for
FMO09235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20534517..20534592 | 1..75 | 94 | -> | Plus |
| 2R | 20534654..20535328 | 76..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:55 Download gff for
FMO09235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16422022..16422097 | 1..75 | 94 | -> | Plus |
| arm_2R | 16422159..16422833 | 76..749 | 99 | | Plus |
