Clone FMO09236 Report

Search the DGRC for FMO09236

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:92
Well:36
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10031-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09236.5prime Sequence

413 bp (413 high quality bases) assembled on 2010-09-13

> FMO09236.5prime
CAGTCGACATGCTTCTGCGGATGACCCAGTTTCTCTGCCTTGCGGCACTC
GTTTTGCTAAGTCTTATGCAACTTACGCAGGCAGTAGCCACTCCCAATAA
TAATAATAATAATAATAACAATATTAAACCGAAGGCTGTGGTTCAGGTGC
AACCTGGAAATCCATCGGGAAACAAGCCTGCAGTTGCCACAACTACAATC
AAACCACAGAGACTGGTACCAGATCCCAAATGCCTGCAGCCCTTGGACGT
TGGTCCATGCCGCATGAGCCTAGAAAGGTTCTACTACAACAAGGATTCAA
AAGCTTGCGAGACCTTCAAGTACGGAGGATGTCGAGGCAATGACAATCGT
TGGGGATTCCGACAAACTTGTGAGGAGGCTTGTATTCCCAAAAAGGCAAG
CTTTCTAGACCAT

FMO09236.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10031-RA 577 CG10031-RA 53..439 9..395 1935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3698827..3699040 222..9 1070 100 Minus
2L 23513712 2L 3698589..3698763 395..221 875 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:34:23 has no hits.

FMO09236.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:01:10 Download gff for FMO09236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10031-RA 46..438 1..395 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:53 Download gff for FMO09236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10031-RA 47..439 1..395 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:33 Download gff for FMO09236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10031-RA 47..439 1..395 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:33 Download gff for FMO09236.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3698590..3698761 223..394 100 <- Minus
2L 3698827..3699046 1..222 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:53 Download gff for FMO09236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3698590..3698761 223..394 100 <- Minus
arm_2L 3698827..3699046 1..222 98   Minus