FMO09237.5prime Sequence
925 bp (887 high quality bases) assembled on 2010-09-13
> FMO09237.5prime
CAGTCGACATGGACTTTGATGAGTTCCGTGAATTTGGCCATGCCTCCATC
GAGTTCCTTATCAACTATCTGAGCGGCATACGTGAGAGGGATGTCCTGCC
CAGCACGGCTCCATATGCGGTGATCAATCAGCTGCCCAAGGAGATTCCCG
AGCAGCCCGATCATTGGCGCGAGGTCCTCAAGGATCTGGAGAACATCATC
CTGCCGGGTCTGACCCACTGGCAATCGCCCTACTTCAATGCCTTCTATCC
GTCATCCTCGTCGGCGGGCTCCATCATCGGTGAGCTGCTGATCGCGGGCA
TCGGAGTCCTTGGATTCAGTTGGATCTGCAGTCCCGCCTGCACAGAACTG
GAGGTGGTGGTCATGGACTGGCTGGCCAAGTTCCTGAAGCTGCCCGCACA
CTTCCAGCACGCCAGCGATGGACCAGGAGGCGGGGTGATCCAGGGATCAT
CTAGCGAGGCTGTGTTGGTGGCTGTCCTAGCTGCCAGGGAACAAGCTGTG
GCCAACTACAGGGAATCGCATCCGGAGCTGAGCGAAAGTGAGGTGCGTGG
CCGCTTGGTGGCCTACTCCTCGGACCAGAGTAACAGCTGCATTGAGAAGG
CTGGAGTCCTGGCTGCCATGCCGATTCGATTGCTGCCGGCTGGAGAGGAT
TTCGTACTTAGAGGCGATACACTGAGAGGAGCCATCGAGGAGGACGTGGC
AGCGGGCAGGATTCCGGTGATCTGCGTTGCCACTCTGGGCACCACGGGCA
CTTGTGCCTATGACGACATTGAATCCCTGTCCGCTGTCTGCGAGAATTCA
AGGTGTGGCTCCATGTTGATGCCGCGTATGCAGTGGAGCCTTTGTTCTGG
AGAATGTTCGGATTTGCGAAGGGATTGGATCGCGTGGACACCCAAACTTC
AACCTGCACAAGTCAAGCTGGTCAC
FMO09237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RB | 1749 | CG10501-RB | 117..1039 | 8..924 | 4375 | 98.7 | Plus |
| amd-RA | 1792 | CG10501-RA | 348..1082 | 196..924 | 2865 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19112793..19113388 | 323..913 | 2655 | 98.3 | Plus |
| 2L | 23513712 | 2L | 19110410..19110646 | 87..323 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 19110270..19110351 | 8..89 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:33:42 has no hits.
FMO09237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:59 Download gff for
FMO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 106..1034 | 1..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:32 Download gff for
FMO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 111..1039 | 1..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:12 Download gff for
FMO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 111..1039 | 1..925 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:12 Download gff for
FMO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19110264..19110350 | 1..88 | 96 | -> | Plus |
| 2L | 19110412..19110646 | 89..323 | 100 | -> | Plus |
| 2L | 19112794..19113400 | 324..925 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:32 Download gff for
FMO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19110264..19110350 | 1..88 | 96 | -> | Plus |
| arm_2L | 19110412..19110646 | 89..323 | 100 | -> | Plus |
| arm_2L | 19112794..19113400 | 324..925 | 97 | | Plus |
