FMO09238.5prime Sequence
1106 bp (961 high quality bases) assembled on 2010-09-13
> FMO09238.5prime
CAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGAACCTGGTG
AAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACGGAGGAGAA
ACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCAGAATCTCG
CCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAGTGCGCGAC
ACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAAGACTTCAT
CTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAACCTAGAGC
ACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGCAGGATTTA
CCCTATGGTCAGGCTCTGATCAAGGTCGGCCTAGCGGAACAGAAACTGGG
CCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTTTACACAGC
CGTTGCGCAAGTTACTAGACGGCGAAATGAAGACAATTGGCAAGGAGCGA
GGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAGAACAGGGT
GAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGGCGGAACGGGACTTGC
GGGTGGCTCAGGCCGAGTTCGACCGGCAGGCGGAGATTACCAAGCTGCTG
CTGGACGGGATCAGCACATCGCAGCATCTCATTTGCGCCACTTGCACGCC
TTCATCCAGACGCAAGTGCGCTACTACAAGCAGTGCGGCGATGTCATGGA
GCAGCTGCAGCGTGAACTGGCCAACTTGGGAGGCCCACGCCATACATTCC
GCTCGACGTGAACGAGGCAGTGCCAGCAAGTCCAACATATCGTCCGGAGC
CGCAGCCCGTGGTCCTGGCAACAATCACTCTGCCAATATGGCTGCCACCG
GCACAGCCTAATCAGCCCATGCACGTCAGCACGGATCAGATGCAAGGGCA
CGCGTCCTTTGCTCCTACGACGCCAAGGATCCAACCGAGCTTAATTGAGC
GCAATGGAGGTGATCTTCTGACTGGATGCTCACAGTAACCAAGAATCATG
TACGGAAACAGGACATGAGGTCTGGTGCACCGCATTTGTGAAATGCTCGA
CAAAAG
FMO09238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RB | 2190 | CG9834-RB | 114..1226 | 9..1101 | 4875 | 97.1 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..880 | 9..774 | 3780 | 99.6 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 114..689 | 9..584 | 2850 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309815..19310316 | 585..84 | 2480 | 99.6 | Minus |
| 2R | 25286936 | 2R | 19309393..19309584 | 774..584 | 910 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19308587..19308803 | 996..784 | 860 | 96.3 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:33:39 has no hits.
FMO09238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 10:00:59 Download gff for
FMO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RB | 141..1257 | 9..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:36:30 Download gff for
FMO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RB | 114..1230 | 9..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:11 Download gff for
FMO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RB | 114..1230 | 9..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:11 Download gff for
FMO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19308587..19308813 | 775..996 | 96 | <- | Minus |
| 2R | 19309393..19309583 | 585..774 | 99 | <- | Minus |
| 2R | 19309816..19310313 | 87..584 | 99 | <- | Minus |
| 2R | 19310475..19310552 | 9..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:36:30 Download gff for
FMO09238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15196092..15196318 | 775..996 | 96 | <- | Minus |
| arm_2R | 15196898..15197088 | 585..774 | 99 | <- | Minus |
| arm_2R | 15197321..15197818 | 87..584 | 99 | <- | Minus |
| arm_2R | 15197980..15198057 | 9..86 | 100 | | Minus |
